National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30           1                        
K     12                                    
L     24               1                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Taiwan 27202 A 150 150
1 Taiwan 27203 T 150 150
2 Taiwan 27204 G 150 150
3 Taiwan 27205 T 150 150
4 Taiwan 27206 T 150 150
5 Taiwan 27207 T 150 150
6 Taiwan 27208 C 150 150
7 Taiwan 27209 A 150 150
8 Taiwan 27210 T 150 150
9 Taiwan 27211 C 150 150
10 Taiwan 27212 T 150 150
11 Taiwan 27213 C 150 150
12 Taiwan 27214 G 150 150
13 Taiwan 27215 T 150 150
14 Taiwan 27216 T 150 150
15 Taiwan 27217 G 150 150
16 Taiwan 27218 A 150 150
17 Taiwan 27219 C 150 150
18 Taiwan 27220 T 150 150
19 Taiwan 27221 T 150 150
20 Taiwan 27222 T 150 150
21 Taiwan 27223 C 150 150
22 Taiwan 27224 A 150 150
23 Taiwan 27225 G 150 150
24 Taiwan 27226 G 150 150
25 Taiwan 27227 T 150 150
26 Taiwan 27228 T 150 150
27 Taiwan 27229 A 150 150
28 Taiwan 27230 C 150 150
29 Taiwan 27231 T 150 150
30 Taiwan 27232 A 150 150
31 Taiwan 27233 T 150 150
32 Taiwan 27234 A 150 150
33 Taiwan 27235 G 150 150
34 Taiwan 27236 C 150 150
35 Taiwan 27237 A 150 150
36 Taiwan 27238 G 150 150
37 Taiwan 27239 A 150 150
38 Taiwan 27240 G 150 150
39 Taiwan 27241 A 150 150
40 Taiwan 27242 T 150 150
41 Taiwan 27243 A 150 150
42 Taiwan 27244 T 150 150
43 Taiwan 27245 T 150 150
44 Taiwan 27246 A 150 150
45 Taiwan 27247 C T 150 149 Leu16Leu
46 Taiwan 27248 T 150 150
47 Taiwan 27249 A 150 150
48 Taiwan 27250 A 150 150
49 Taiwan 27251 T 150 150
50 Taiwan 27252 T 150 150
51 Taiwan 27253 A 150 150
52 Taiwan 27254 T 150 150
53 Taiwan 27255 T 150 150
54 Taiwan 27256 A 150 150
55 Taiwan 27257 T 150 150
56 Taiwan 27258 G 150 150
57 Taiwan 27259 A 150 150
58 Taiwan 27260 G 150 150
59 Taiwan 27261 G 150 150
60 Taiwan 27262 A 150 150
61 Taiwan 27263 C 150 150
62 Taiwan 27264 T 150 150
63 Taiwan 27265 T 150 150
64 Taiwan 27266 T 150 150
65 Taiwan 27267 T 150 150
66 Taiwan 27268 A 150 150
67 Taiwan 27269 A 150 150
68 Taiwan 27270 A 150 150
69 Taiwan 27271 G 150 150
70 Taiwan 27272 T 150 150
71 Taiwan 27273 T 150 150
72 Taiwan 27274 T 150 150
73 Taiwan 27275 C 150 150
74 Taiwan 27276 C 150 150
75 Taiwan 27277 A 150 150
76 Taiwan 27278 T 150 150
77 Taiwan 27279 T 150 150
78 Taiwan 27280 T 150 150
79 Taiwan 27281 G 150 150
80 Taiwan 27282 G 150 150
81 Taiwan 27283 A 150 150
82 Taiwan 27284 A 150 150
83 Taiwan 27285 T 150 150
84 Taiwan 27286 C 150 150
85 Taiwan 27287 T 150 150
86 Taiwan 27288 T 150 150
87 Taiwan 27289 G 150 150
88 Taiwan 27290 A 150 150
89 Taiwan 27291 T 150 150
90 Taiwan 27292 T 150 150
91 Taiwan 27293 A 150 150
92 Taiwan 27294 C 150 150
93 Taiwan 27295 A 150 150
94 Taiwan 27296 T 150 150
95 Taiwan 27297 C T 150 149 Ile32Ile
96 Taiwan 27298 A 150 150
97 Taiwan 27299 T 150 150
98 Taiwan 27300 A 150 150
99 Taiwan 27301 A 150 150
100 Taiwan 27302 A 150 150
101 Taiwan 27303 C 150 150
102 Taiwan 27304 C 150 150
103 Taiwan 27305 T 150 150
104 Taiwan 27306 C 150 150
105 Taiwan 27307 A 150 150
106 Taiwan 27308 T 150 150
107 Taiwan 27309 A 150 150
108 Taiwan 27310 A 150 150
109 Taiwan 27311 T 150 150
110 Taiwan 27312 T 150 150
111 Taiwan 27313 A 150 150
112 Taiwan 27314 A 150 150
113 Taiwan 27315 A 150 150
114 Taiwan 27316 A 150 150
115 Taiwan 27317 A 150 150
116 Taiwan 27318 T 150 150
117 Taiwan 27319 T 150 150
118 Taiwan 27320 T 150 150
119 Taiwan 27321 A 150 150
120 Taiwan 27322 T 150 150
121 Taiwan 27323 C 150 150
122 Taiwan 27324 T 150 150
123 Taiwan 27325 A 150 150
124 Taiwan 27326 A 150 150
125 Taiwan 27327 G 150 150
126 Taiwan 27328 T 150 150
127 Taiwan 27329 C 150 150
128 Taiwan 27330 A 150 150
129 Taiwan 27331 C 150 150
130 Taiwan 27332 T 150 150
131 Taiwan 27333 A 150 150
132 Taiwan 27334 A 150 150
133 Taiwan 27335 C 150 150
134 Taiwan 27336 T 150 150
135 Taiwan 27337 G 150 150
136 Taiwan 27338 A 150 150
137 Taiwan 27339 G 150 150
138 Taiwan 27340 A 150 150
139 Taiwan 27341 A 150 150
140 Taiwan 27342 T 150 150
141 Taiwan 27343 A 150 150
142 Taiwan 27344 A 150 150
143 Taiwan 27345 A 150 150
144 Taiwan 27346 T 150 150
145 Taiwan 27347 A 150 150
146 Taiwan 27348 T 150 150
147 Taiwan 27349 T 150 150
148 Taiwan 27350 C 150 150
149 Taiwan 27351 T 150 150
150 Taiwan 27352 C 150 150
151 Taiwan 27353 A 150 150
152 Taiwan 27354 A 150 150
153 Taiwan 27355 T 150 150
154 Taiwan 27356 T 150 150
155 Taiwan 27357 A 150 150
156 Taiwan 27358 G 150 150
157 Taiwan 27359 A 150 150
158 Taiwan 27360 T 150 150
159 Taiwan 27361 G 150 150
160 Taiwan 27362 A 150 150
161 Taiwan 27363 A 150 150
162 Taiwan 27364 G 150 150
163 Taiwan 27365 A 150 150
164 Taiwan 27366 G 150 150
165 Taiwan 27367 C 150 150
166 Taiwan 27368 A 150 150
167 Taiwan 27369 A 150 150
168 Taiwan 27370 C 150 150
169 Taiwan 27371 C 150 150
170 Taiwan 27372 A 150 150
171 Taiwan 27373 A 150 150
172 Taiwan 27374 T 150 150
173 Taiwan 27375 G 150 150
174 Taiwan 27376 G 150 150
175 Taiwan 27377 A 150 150
176 Taiwan 27378 G 150 150
177 Taiwan 27379 A 150 150
178 Taiwan 27380 T 150 150
179 Taiwan 27381 T 150 150
180 Taiwan 27382 G 150 150
181 Taiwan 27383 A 150 150
182 Taiwan 27384 T 150 150
183 Taiwan 27385 T 150 150
184 Taiwan 27386 A 150 150
185 Taiwan 27387 A 150 150