National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1     1                          
E 1   16                                    
F     9       1       1           1        
H     3                                    
I     30                                    
K     12                                    
L     24               3                    
M     9           1                        
N     12             1                      
P     3                     1              
Q     9                       1            
R     3                                    
S     12                                    
T     9           1                 1      
V     9                                    
W     3                                    
Y     6                                   2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sweden 27202 A 1388 1388
1 Sweden 27203 T 1388 1388
2 Sweden 27204 G T 1388 1385 Met1?
3 Sweden 27205 T 1388 1388
4 Sweden 27206 T C 1388 1387 Phe2Ser
5 Sweden 27207 T 1388 1388
6 Sweden 27208 C 1388 1388
7 Sweden 27209 A 1388 1388
8 Sweden 27210 T 1388 1388
9 Sweden 27211 C 1388 1388
10 Sweden 27212 T 1388 1388
11 Sweden 27213 C T 1388 1387 Leu4Leu
12 Sweden 27214 G 1388 1388
13 Sweden 27215 T 1388 1388
14 Sweden 27216 T 1388 1388
15 Sweden 27217 G 1388 1388
16 Sweden 27218 A 1388 1388
17 Sweden 27219 C 1388 1388
18 Sweden 27220 T C 1388 1386 Phe7Leu
19 Sweden 27221 T 1388 1388
20 Sweden 27222 T 1388 1388
21 Sweden 27223 C 1388 1388
22 Sweden 27224 A 1388 1388
23 Sweden 27225 G A 1388 1387 Gln8Gln
24 Sweden 27226 G 1388 1388
25 Sweden 27227 T 1388 1388
26 Sweden 27228 T 1388 1388
27 Sweden 27229 A 1388 1388
28 Sweden 27230 C 1388 1388
29 Sweden 27231 T C 1388 1387 Thr10Thr
30 Sweden 27232 A 1388 1388
31 Sweden 27233 T 1388 1388
32 Sweden 27234 A 1388 1388
33 Sweden 27235 G 1388 1388
34 Sweden 27236 C 1388 1388
35 Sweden 27237 A 1388 1388
36 Sweden 27238 G 1388 1388
37 Sweden 27239 A 1388 1388
38 Sweden 27240 G 1388 1388
39 Sweden 27241 A 1388 1388
40 Sweden 27242 T 1388 1388
41 Sweden 27243 A 1388 1388
42 Sweden 27244 T 1388 1388
43 Sweden 27245 T 1388 1388
44 Sweden 27246 A 1388 1388
45 Sweden 27247 C T 1388 1387 Leu16Leu
46 Sweden 27248 T 1388 1388
47 Sweden 27249 A 1388 1388
48 Sweden 27250 A 1388 1388
49 Sweden 27251 T 1388 1388
50 Sweden 27252 T 1388 1388
51 Sweden 27253 A 1388 1388
52 Sweden 27254 T 1388 1388
53 Sweden 27255 T 1388 1388
54 Sweden 27256 A 1388 1388
55 Sweden 27257 T 1388 1388
56 Sweden 27258 G 1388 1388
57 Sweden 27259 A 1388 1388
58 Sweden 27260 G 1388 1388
59 Sweden 27261 G 1388 1388
60 Sweden 27262 A 1388 1388
61 Sweden 27263 C T 1388 1387 Thr21Ile
62 Sweden 27264 T 1388 1388
63 Sweden 27265 T 1388 1388
64 Sweden 27266 T 1388 1388
65 Sweden 27267 T C 1388 1387 Phe22Phe
66 Sweden 27268 A 1388 1388
67 Sweden 27269 A 1388 1388
68 Sweden 27270 A 1388 1388
69 Sweden 27271 G 1388 1388
70 Sweden 27272 T 1388 1388
71 Sweden 27273 T 1388 1388
72 Sweden 27274 T 1388 1388
73 Sweden 27275 C 1388 1388
74 Sweden 27276 C 1388 1388
75 Sweden 27277 A 1388 1388
76 Sweden 27278 T 1388 1388
77 Sweden 27279 T 1388 1388
78 Sweden 27280 T 1388 1388
79 Sweden 27281 G 1388 1388
80 Sweden 27282 G 1388 1388
81 Sweden 27283 A 1388 1388
82 Sweden 27284 A 1388 1388
83 Sweden 27285 T 1388 1388
84 Sweden 27286 C 1388 1388
85 Sweden 27287 T 1388 1388
86 Sweden 27288 T 1388 1388
87 Sweden 27289 G 1388 1388
88 Sweden 27290 A 1388 1388
89 Sweden 27291 T 1388 1388
90 Sweden 27292 T 1388 1388
91 Sweden 27293 A 1388 1388
92 Sweden 27294 C T 1388 1383 Tyr31Tyr
93 Sweden 27295 A 1388 1388
94 Sweden 27296 T 1388 1388
95 Sweden 27297 C 1388 1388
96 Sweden 27298 A 1388 1388
97 Sweden 27299 T 1388 1388
98 Sweden 27300 A 1388 1388
99 Sweden 27301 A 1388 1388
100 Sweden 27302 A 1388 1388
101 Sweden 27303 C A 1388 1383 Asn34Lys
102 Sweden 27304 C 1388 1388
103 Sweden 27305 T 1388 1388
104 Sweden 27306 C 1388 1388
105 Sweden 27307 A 1388 1388
106 Sweden 27308 T 1388 1388
107 Sweden 27309 A 1388 1388
108 Sweden 27310 A 1388 1388
109 Sweden 27311 T 1388 1388
110 Sweden 27312 T 1388 1388
111 Sweden 27313 A 1388 1388
112 Sweden 27314 A 1388 1388
113 Sweden 27315 A 1388 1388
114 Sweden 27316 A 1388 1388
115 Sweden 27317 A 1388 1388
116 Sweden 27318 T 1388 1388
117 Sweden 27319 T C 1388 1386 Leu40Leu
118 Sweden 27320 T 1388 1388
119 Sweden 27321 A 1388 1388
120 Sweden 27322 T 1388 1388
121 Sweden 27323 C 1388 1388
122 Sweden 27324 T 1388 1388
123 Sweden 27325 A 1388 1388
124 Sweden 27326 A 1388 1388
125 Sweden 27327 G 1388 1388
126 Sweden 27328 T 1388 1388
127 Sweden 27329 C 1388 1388
128 Sweden 27330 A 1388 1388
129 Sweden 27331 C 1388 1388
130 Sweden 27332 T 1388 1388
131 Sweden 27333 A 1388 1388
132 Sweden 27334 A 1388 1388
133 Sweden 27335 C 1388 1388
134 Sweden 27336 T 1388 1388
135 Sweden 27337 G 1388 1388
136 Sweden 27338 A 1388 1388
137 Sweden 27339 G 1388 1388
138 Sweden 27340 A 1388 1388
139 Sweden 27341 A 1388 1388
140 Sweden 27342 T 1388 1388
141 Sweden 27343 A 1388 1388
142 Sweden 27344 A 1388 1388
143 Sweden 27345 A 1388 1388
144 Sweden 27346 T 1388 1388
145 Sweden 27347 A 1388 1388
146 Sweden 27348 T C 1388 1387 Tyr49Tyr
147 Sweden 27349 T 1388 1388
148 Sweden 27350 C 1388 1388
149 Sweden 27351 T 1388 1388
150 Sweden 27352 C 1388 1388
151 Sweden 27353 A 1388 1388
152 Sweden 27354 A 1388 1388
153 Sweden 27355 T 1388 1388
154 Sweden 27356 T 1388 1388
155 Sweden 27357 A 1388 1388
156 Sweden 27358 G 1388 1388
157 Sweden 27359 A 1388 1388
158 Sweden 27360 T 1388 1388
159 Sweden 27361 G 1388 1388
160 Sweden 27362 A 1388 1388
161 Sweden 27363 A 1388 1388
162 Sweden 27364 G T 1388 1387 Glu55*
163 Sweden 27365 A 1388 1388
164 Sweden 27366 G 1388 1388
165 Sweden 27367 C 1388 1388
166 Sweden 27368 A 1388 1388
167 Sweden 27369 A 1388 1388
168 Sweden 27370 C 1388 1388
169 Sweden 27371 C 1388 1388
170 Sweden 27372 A T 1388 1387 Pro57Pro
171 Sweden 27373 A 1388 1388
172 Sweden 27374 T 1388 1388
173 Sweden 27375 G 1388 1388
174 Sweden 27376 G 1388 1388
175 Sweden 27377 A 1388 1388
176 Sweden 27378 G 1388 1388
177 Sweden 27379 A 1388 1388
178 Sweden 27380 T 1388 1388
179 Sweden 27381 T 1388 1388
180 Sweden 27382 G C 1387 1386 Asp61His
181 Sweden 27383 A 1387 1387
182 Sweden 27384 T C 1387 1385 Asp61Asp
183 Sweden 27385 T 1387 1387
184 Sweden 27386 A 1387 1387
185 Sweden 27387 A 1387 1387