National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                             1      
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9       1                            
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Suriname 27202 A 71 71
1 Suriname 27203 T 71 71
2 Suriname 27204 G 71 71
3 Suriname 27205 T 71 71
4 Suriname 27206 T 71 71
5 Suriname 27207 T 71 71
6 Suriname 27208 C 71 71
7 Suriname 27209 A 71 71
8 Suriname 27210 T 71 71
9 Suriname 27211 C 71 71
10 Suriname 27212 T 71 71
11 Suriname 27213 C 71 71
12 Suriname 27214 G 71 71
13 Suriname 27215 T 71 71
14 Suriname 27216 T 71 71
15 Suriname 27217 G 71 71
16 Suriname 27218 A 71 71
17 Suriname 27219 C 71 71
18 Suriname 27220 T 71 71
19 Suriname 27221 T 71 71
20 Suriname 27222 T 71 71
21 Suriname 27223 C 71 71
22 Suriname 27224 A 71 71
23 Suriname 27225 G 71 71
24 Suriname 27226 G 71 71
25 Suriname 27227 T 71 71
26 Suriname 27228 T 71 71
27 Suriname 27229 A 71 71
28 Suriname 27230 C 71 71
29 Suriname 27231 T 71 71
30 Suriname 27232 A 71 71
31 Suriname 27233 T 71 71
32 Suriname 27234 A 71 71
33 Suriname 27235 G 71 71
34 Suriname 27236 C 71 71
35 Suriname 27237 A 71 71
36 Suriname 27238 G 71 71
37 Suriname 27239 A 71 71
38 Suriname 27240 G 71 71
39 Suriname 27241 A 71 71
40 Suriname 27242 T 71 71
41 Suriname 27243 A 71 71
42 Suriname 27244 T 71 71
43 Suriname 27245 T 71 71
44 Suriname 27246 A 71 71
45 Suriname 27247 C 71 71
46 Suriname 27248 T 71 71
47 Suriname 27249 A 71 71
48 Suriname 27250 A 71 71
49 Suriname 27251 T 71 71
50 Suriname 27252 T 71 71
51 Suriname 27253 A 71 71
52 Suriname 27254 T 71 71
53 Suriname 27255 T 71 71
54 Suriname 27256 A 71 71
55 Suriname 27257 T 71 71
56 Suriname 27258 G 71 71
57 Suriname 27259 A 71 71
58 Suriname 27260 G 71 71
59 Suriname 27261 G 71 71
60 Suriname 27262 A 71 71
61 Suriname 27263 C 71 71
62 Suriname 27264 T 71 71
63 Suriname 27265 T 71 71
64 Suriname 27266 T 71 71
65 Suriname 27267 T 71 71
66 Suriname 27268 A 71 71
67 Suriname 27269 A 71 71
68 Suriname 27270 A 71 71
69 Suriname 27271 G T 71 70 Val24Phe
70 Suriname 27272 T 71 71
71 Suriname 27273 T 71 71
72 Suriname 27274 T 71 71
73 Suriname 27275 C 71 71
74 Suriname 27276 C 71 71
75 Suriname 27277 A 71 71
76 Suriname 27278 T 71 71
77 Suriname 27279 T 71 71
78 Suriname 27280 T 71 71
79 Suriname 27281 G 71 71
80 Suriname 27282 G 71 71
81 Suriname 27283 A 71 71
82 Suriname 27284 A 71 71
83 Suriname 27285 T 71 71
84 Suriname 27286 C 71 71
85 Suriname 27287 T 71 71
86 Suriname 27288 T 71 71
87 Suriname 27289 G 71 71
88 Suriname 27290 A 71 71
89 Suriname 27291 T 71 71
90 Suriname 27292 T 71 71
91 Suriname 27293 A 71 71
92 Suriname 27294 C 71 71
93 Suriname 27295 A 71 71
94 Suriname 27296 T 71 71
95 Suriname 27297 C 71 71
96 Suriname 27298 A 71 71
97 Suriname 27299 T C 71 66 Ile33Thr
98 Suriname 27300 A 71 71
99 Suriname 27301 A 71 71
100 Suriname 27302 A 71 71
101 Suriname 27303 C 71 71
102 Suriname 27304 C 71 71
103 Suriname 27305 T 71 71
104 Suriname 27306 C 71 71
105 Suriname 27307 A 71 71
106 Suriname 27308 T 71 71
107 Suriname 27309 A 71 71
108 Suriname 27310 A 71 71
109 Suriname 27311 T 71 71
110 Suriname 27312 T 71 71
111 Suriname 27313 A 71 71
112 Suriname 27314 A 71 71
113 Suriname 27315 A 71 71
114 Suriname 27316 A 71 71
115 Suriname 27317 A 71 71
116 Suriname 27318 T 71 71
117 Suriname 27319 T 71 71
118 Suriname 27320 T 71 71
119 Suriname 27321 A 71 71
120 Suriname 27322 T 71 71
121 Suriname 27323 C 71 71
122 Suriname 27324 T 71 71
123 Suriname 27325 A 71 71
124 Suriname 27326 A 71 71
125 Suriname 27327 G 71 71
126 Suriname 27328 T 71 71
127 Suriname 27329 C 71 71
128 Suriname 27330 A 71 71
129 Suriname 27331 C 71 71
130 Suriname 27332 T 71 71
131 Suriname 27333 A 71 71
132 Suriname 27334 A 71 71
133 Suriname 27335 C 71 71
134 Suriname 27336 T 71 71
135 Suriname 27337 G 71 71
136 Suriname 27338 A 71 71
137 Suriname 27339 G 71 71
138 Suriname 27340 A 71 71
139 Suriname 27341 A 71 71
140 Suriname 27342 T 71 71
141 Suriname 27343 A 71 71
142 Suriname 27344 A 71 71
143 Suriname 27345 A 71 71
144 Suriname 27346 T 71 71
145 Suriname 27347 A 71 71
146 Suriname 27348 T 71 71
147 Suriname 27349 T 71 71
148 Suriname 27350 C 71 71
149 Suriname 27351 T 71 71
150 Suriname 27352 C 71 71
151 Suriname 27353 A 71 71
152 Suriname 27354 A 71 71
153 Suriname 27355 T 71 71
154 Suriname 27356 T 71 71
155 Suriname 27357 A 71 71
156 Suriname 27358 G 71 71
157 Suriname 27359 A 71 71
158 Suriname 27360 T 71 71
159 Suriname 27361 G 71 71
160 Suriname 27362 A 71 71
161 Suriname 27363 A 71 71
162 Suriname 27364 G 71 71
163 Suriname 27365 A 71 71
164 Suriname 27366 G 71 71
165 Suriname 27367 C 71 71
166 Suriname 27368 A 71 71
167 Suriname 27369 A 71 71
168 Suriname 27370 C 71 71
169 Suriname 27371 C 71 71
170 Suriname 27372 A 71 71
171 Suriname 27373 A 71 71
172 Suriname 27374 T 71 71
173 Suriname 27375 G 71 71
174 Suriname 27376 G 71 71
175 Suriname 27377 A 71 71
176 Suriname 27378 G 71 71
177 Suriname 27379 A 71 71
178 Suriname 27380 T 71 71
179 Suriname 27381 T 71 71
180 Suriname 27382 G 71 71
181 Suriname 27383 A 71 71
182 Suriname 27384 T 71 71
183 Suriname 27385 T 71 71
184 Suriname 27386 A 71 71
185 Suriname 27387 A 71 71