National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
C                                            
D     12     1               2               2
E 1   16 1   2                                
F     9                                      
H     3                                      
I     30             4   2 1         1 2 2    
K     12               1                      
L     24                 5                    
M     9                                      
N     12               1             1        
P     3                 1                    
Q 1   9                         1            
R     3                             1        
S     12         1             1              
T     9             1       1                
V     9 1                                    
W     3                 1                    
Y     6   1       1                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Spain 27202 A 7367 7367
1 Spain 27203 T 7367 7367
2 Spain 27204 G 7367 7367
3 Spain 27205 T 7367 7366
4 Spain 27206 T 7371 7371
5 Spain 27207 T 7371 7370
6 Spain 27208 C 7371 7368
7 Spain 27209 A 7371 7371
8 Spain 27210 T 7371 7371
9 Spain 27211 C 7371 7371
10 Spain 27212 T 7371 7371
11 Spain 27213 C T,G 7371 7360 Leu4Leu-p.Leu4Leu
12 Spain 27214 G 7371 7371
13 Spain 27215 T C 7371 7370 Val5Ala
14 Spain 27216 T 7371 7370
15 Spain 27217 G 7371 7371
16 Spain 27218 A 7372 7372
17 Spain 27219 C 7372 7372
18 Spain 27220 T 7372 7372
19 Spain 27221 T 7372 7371
20 Spain 27222 T 7372 7372
21 Spain 27223 C T 7372 7368 Gln8*
22 Spain 27224 A 7373 7373
23 Spain 27225 G A 7374 7373 Gln8Gln
24 Spain 27226 G 7374 7374
25 Spain 27227 T 7374 7374
26 Spain 27228 T 7375 7373
27 Spain 27229 A 7376 7373
28 Spain 27230 C 7376 7373
29 Spain 27231 T 7376 7373
30 Spain 27232 A 7376 7374
31 Spain 27233 T 7376 7376
32 Spain 27234 A G 7376 7374 Ile11Met
33 Spain 27235 G 7376 7372
34 Spain 27236 C 7376 7376
35 Spain 27237 A 7376 7376
36 Spain 27238 G 7376 7376
37 Spain 27239 A C 7376 7375 Glu13Ala
38 Spain 27240 G T 7376 7374 Glu13Asp
39 Spain 27241 A G 7376 7375 Ile14Val
40 Spain 27242 T 7376 7376
41 Spain 27243 A 7376 7376
42 Spain 27244 T 7376 7376
43 Spain 27245 T 7376 7376
44 Spain 27246 A 7376 7375
45 Spain 27247 C T 7376 7372 Leu16Leu
46 Spain 27248 T 7376 7376
47 Spain 27249 A 7376 7376
48 Spain 27250 A 7374 7374
49 Spain 27251 T 7374 7374
50 Spain 27252 T 7374 7374
51 Spain 27253 A 7374 7374
52 Spain 27254 T 7374 7374
53 Spain 27255 T 7374 7373
54 Spain 27256 A 7374 7373
55 Spain 27257 T 7374 7373
56 Spain 27258 G 7374 7373
57 Spain 27259 A 7374 7373
58 Spain 27260 G 7374 7373
59 Spain 27261 G T 7374 7370 Arg20Ser
60 Spain 27262 A 7371 7370
61 Spain 27263 C T,A 7371 7363 Thr21Ile-p.Thr21Asn
62 Spain 27264 T 7371 7370
63 Spain 27265 T 7371 7369
64 Spain 27266 T 7372 7370
65 Spain 27267 T 7372 7370
66 Spain 27268 A 7372 7370
67 Spain 27269 A 7372 7370
68 Spain 27270 A 7372 7370
69 Spain 27271 G 7372 7370
70 Spain 27272 T 7371 7369
71 Spain 27273 T 7371 7369
72 Spain 27274 T 7371 7369
73 Spain 27275 C 7371 7369
74 Spain 27276 C 7371 7369
75 Spain 27277 A 7372 7370
76 Spain 27278 T 7372 7370
77 Spain 27279 T 7372 7370
78 Spain 27280 T 7372 7370
79 Spain 27281 G T 7372 7363 Trp27Leu
80 Spain 27282 G 7372 7370
81 Spain 27283 A 7372 7369
82 Spain 27284 A 7372 7370
83 Spain 27285 T 7372 7370
84 Spain 27286 C 7372 7370
85 Spain 27287 T 7372 7369
86 Spain 27288 T 7372 7369
87 Spain 27289 G 7372 7369
88 Spain 27290 A 7372 7369
89 Spain 27291 T 7372 7372
90 Spain 27292 T 7372 7372
91 Spain 27293 A 7372 7372
92 Spain 27294 C 7372 7372
93 Spain 27295 A 7372 7372
94 Spain 27296 T G,C 7372 7365 Ile32Ser-p.Ile32Thr
95 Spain 27297 C T 7372 7369 Ile32Ile
96 Spain 27298 A T 7372 7371 Ile33Leu
97 Spain 27299 T C 7372 7366 Ile33Thr
98 Spain 27300 A T 7372 7371 Ile33Ile
99 Spain 27301 A 7372 7372
100 Spain 27302 A G 7372 7371 Asn34Ser
101 Spain 27303 C A 7372 7371 Asn34Lys
102 Spain 27304 C 7372 7371
103 Spain 27305 T 7372 7369
104 Spain 27306 C 7372 7369
105 Spain 27307 A G,C 7372 7366 Ile36Val-p.Ile36Leu
106 Spain 27308 T 7372 7369
107 Spain 27309 A 7372 7369
108 Spain 27310 A 7372 7370
109 Spain 27311 T 7372 7370
110 Spain 27312 T 7372 7370
111 Spain 27313 A 7372 7370
112 Spain 27314 A 7372 7370
113 Spain 27315 A 7372 7371
114 Spain 27316 A 7372 7371
115 Spain 27317 A 7372 7371
116 Spain 27318 T 7372 7371
117 Spain 27319 T C 7372 7362 Leu40Leu
118 Spain 27320 T 7372 7372
119 Spain 27321 A G 7372 7371 Leu40Leu
120 Spain 27322 T 7374 7374
121 Spain 27323 C T 7374 7373 Ser41Phe
122 Spain 27324 T 7374 7374
123 Spain 27325 A 7374 7374
124 Spain 27326 A 7374 7374
125 Spain 27327 G 7374 7374
126 Spain 27328 T C 7374 7372 Ser43Pro
127 Spain 27329 C 7374 7373
128 Spain 27330 A 7374 7374
129 Spain 27331 C 7374 7374
130 Spain 27332 T 7374 7374
131 Spain 27333 A 7374 7374
132 Spain 27334 A 7374 7374
133 Spain 27335 C 7374 7374
134 Spain 27336 T 7374 7374
135 Spain 27337 G 7374 7374
136 Spain 27338 A 7374 7374
137 Spain 27339 G 7374 7374
138 Spain 27340 A 7374 7374
139 Spain 27341 A 7374 7374
140 Spain 27342 T 7374 7374
141 Spain 27343 A 7374 7374
142 Spain 27344 A 7374 7373
143 Spain 27345 A G 7374 7372 Lys48Lys
144 Spain 27346 T C 7374 7372 Tyr49His
145 Spain 27347 A G 7374 7372 Tyr49Cys
146 Spain 27348 T 7374 7374
147 Spain 27349 T 7374 7374
148 Spain 27350 C 7373 7373
149 Spain 27351 T 7372 7372
150 Spain 27352 C 7372 7372
151 Spain 27353 A 7372 7372
152 Spain 27354 A 7372 7372
153 Spain 27355 T 7372 7372
154 Spain 27356 T 7372 7372
155 Spain 27357 A 7372 7372
156 Spain 27358 G T,A 7372 7369 Asp53Tyr-p.Asp53Asn
157 Spain 27359 A 7372 7372
158 Spain 27360 T 7372 7372
159 Spain 27361 G 7372 7372
160 Spain 27362 A 7372 7372
161 Spain 27363 A 7372 7372
162 Spain 27364 G T 7372 7371 Glu55*
163 Spain 27365 A 7372 7372
164 Spain 27366 G 7372 7372
165 Spain 27367 C 7372 7371
166 Spain 27368 A 7372 7372
167 Spain 27369 A 7372 7372
168 Spain 27370 C 7371 7371
169 Spain 27371 C T 7371 7369 Pro57Leu
170 Spain 27372 A 7371 7371
171 Spain 27373 A 7371 7371
172 Spain 27374 T 7371 7371
173 Spain 27375 G 7371 7371
174 Spain 27376 G 7371 7371
175 Spain 27377 A 7371 7371
176 Spain 27378 G C 7371 7367 Glu59Asp
177 Spain 27379 A 7371 7371
178 Spain 27380 T 7371 7371
179 Spain 27381 T C,A 7371 7369 Ile60Ile-p.Ile60Ile
180 Spain 27382 G A,T 7369 7347 Asp61Asn-p.Asp61Tyr
181 Spain 27383 A 7368 7367
182 Spain 27384 T C 7368 7340 Asp61Asp
183 Spain 27385 T 7368 7368
184 Spain 27386 A 7365 7365
185 Spain 27387 A 7364 7364