National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                   1
E 1   16                                    
F     9                                    
H     3                                   1
I     30               1                    
K     12                                    
L     24               1                    
M     9                                    
N     12                                    
P     3                                    
Q     9                     1              
R     3                           1        
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Korea 27202 A 1632 1632
1 South_Korea 27203 T 1632 1632
2 South_Korea 27204 G 1632 1632
3 South_Korea 27205 T 1632 1632
4 South_Korea 27206 T 1632 1632
5 South_Korea 27207 T 1632 1632
6 South_Korea 27208 C T 1632 1631 His3Tyr
7 South_Korea 27209 A 1632 1632
8 South_Korea 27210 T 1632 1632
9 South_Korea 27211 C 1632 1632
10 South_Korea 27212 T 1632 1632
11 South_Korea 27213 C 1632 1632
12 South_Korea 27214 G 1632 1632
13 South_Korea 27215 T 1632 1632
14 South_Korea 27216 T 1632 1632
15 South_Korea 27217 G 1632 1632
16 South_Korea 27218 A 1632 1632
17 South_Korea 27219 C 1632 1632
18 South_Korea 27220 T 1632 1632
19 South_Korea 27221 T 1632 1632
20 South_Korea 27222 T 1632 1632
21 South_Korea 27223 C 1632 1632
22 South_Korea 27224 A C 1632 1631 Gln8Pro
23 South_Korea 27225 G 1632 1632
24 South_Korea 27226 G 1632 1632
25 South_Korea 27227 T 1632 1632
26 South_Korea 27228 T 1632 1632
27 South_Korea 27229 A 1632 1632
28 South_Korea 27230 C 1632 1632
29 South_Korea 27231 T 1632 1632
30 South_Korea 27232 A 1632 1632
31 South_Korea 27233 T 1632 1632
32 South_Korea 27234 A 1632 1632
33 South_Korea 27235 G 1632 1632
34 South_Korea 27236 C 1632 1632
35 South_Korea 27237 A 1632 1632
36 South_Korea 27238 G 1632 1632
37 South_Korea 27239 A 1632 1632
38 South_Korea 27240 G 1632 1632
39 South_Korea 27241 A 1632 1632
40 South_Korea 27242 T 1632 1632
41 South_Korea 27243 A 1632 1631
42 South_Korea 27244 T 1632 1632
43 South_Korea 27245 T 1632 1632
44 South_Korea 27246 A 1632 1632
45 South_Korea 27247 C T 1632 1631 Leu16Leu
46 South_Korea 27248 T 1632 1632
47 South_Korea 27249 A 1632 1632
48 South_Korea 27250 A 1632 1632
49 South_Korea 27251 T 1632 1632
50 South_Korea 27252 T 1632 1632
51 South_Korea 27253 A 1632 1632
52 South_Korea 27254 T 1632 1632
53 South_Korea 27255 T 1632 1632
54 South_Korea 27256 A 1632 1632
55 South_Korea 27257 T 1632 1632
56 South_Korea 27258 G 1632 1632
57 South_Korea 27259 A 1632 1632
58 South_Korea 27260 G 1632 1632
59 South_Korea 27261 G T 1632 1631 Arg20Ser
60 South_Korea 27262 A 1632 1632
61 South_Korea 27263 C 1632 1632
62 South_Korea 27264 T 1632 1632
63 South_Korea 27265 T 1632 1632
64 South_Korea 27266 T 1632 1632
65 South_Korea 27267 T 1632 1632
66 South_Korea 27268 A 1632 1632
67 South_Korea 27269 A 1632 1632
68 South_Korea 27270 A 1632 1632
69 South_Korea 27271 G 1632 1632
70 South_Korea 27272 T 1632 1632
71 South_Korea 27273 T 1632 1632
72 South_Korea 27274 T 1632 1632
73 South_Korea 27275 C 1632 1632
74 South_Korea 27276 C 1632 1632
75 South_Korea 27277 A 1632 1632
76 South_Korea 27278 T 1632 1632
77 South_Korea 27279 T 1632 1632
78 South_Korea 27280 T 1632 1632
79 South_Korea 27281 G 1632 1632
80 South_Korea 27282 G 1632 1632
81 South_Korea 27283 A 1632 1632
82 South_Korea 27284 A 1632 1632
83 South_Korea 27285 T 1632 1632
84 South_Korea 27286 C 1632 1632
85 South_Korea 27287 T 1632 1632
86 South_Korea 27288 T 1632 1632
87 South_Korea 27289 G 1632 1632
88 South_Korea 27290 A 1632 1632
89 South_Korea 27291 T 1632 1632
90 South_Korea 27292 T 1632 1632
91 South_Korea 27293 A 1632 1632
92 South_Korea 27294 C 1632 1632
93 South_Korea 27295 A 1632 1632
94 South_Korea 27296 T 1632 1632
95 South_Korea 27297 C 1632 1632
96 South_Korea 27298 A T 1632 1628 Ile33Leu
97 South_Korea 27299 T 1632 1632
98 South_Korea 27300 A 1632 1632
99 South_Korea 27301 A 1632 1632
100 South_Korea 27302 A 1632 1632
101 South_Korea 27303 C 1632 1632
102 South_Korea 27304 C 1632 1632
103 South_Korea 27305 T 1632 1632
104 South_Korea 27306 C 1632 1632
105 South_Korea 27307 A 1632 1632
106 South_Korea 27308 T 1632 1632
107 South_Korea 27309 A 1632 1632
108 South_Korea 27310 A 1632 1632
109 South_Korea 27311 T 1632 1632
110 South_Korea 27312 T 1632 1632
111 South_Korea 27313 A 1632 1632
112 South_Korea 27314 A 1632 1632
113 South_Korea 27315 A 1632 1632
114 South_Korea 27316 A 1632 1632
115 South_Korea 27317 A 1632 1632
116 South_Korea 27318 T 1632 1632
117 South_Korea 27319 T 1632 1632
118 South_Korea 27320 T 1632 1632
119 South_Korea 27321 A 1632 1632
120 South_Korea 27322 T 1632 1632
121 South_Korea 27323 C 1632 1632
122 South_Korea 27324 T 1632 1632
123 South_Korea 27325 A 1632 1632
124 South_Korea 27326 A 1632 1632
125 South_Korea 27327 G 1632 1632
126 South_Korea 27328 T 1632 1632
127 South_Korea 27329 C 1632 1632
128 South_Korea 27330 A 1632 1632
129 South_Korea 27331 C 1632 1632
130 South_Korea 27332 T 1632 1632
131 South_Korea 27333 A 1632 1632
132 South_Korea 27334 A 1632 1632
133 South_Korea 27335 C 1632 1632
134 South_Korea 27336 T 1632 1632
135 South_Korea 27337 G 1632 1632
136 South_Korea 27338 A 1632 1632
137 South_Korea 27339 G 1632 1632
138 South_Korea 27340 A 1632 1632
139 South_Korea 27341 A 1632 1632
140 South_Korea 27342 T 1632 1632
141 South_Korea 27343 A 1632 1632
142 South_Korea 27344 A 1632 1632
143 South_Korea 27345 A 1632 1632
144 South_Korea 27346 T 1632 1632
145 South_Korea 27347 A 1632 1632
146 South_Korea 27348 T 1632 1632
147 South_Korea 27349 T 1632 1632
148 South_Korea 27350 C 1632 1632
149 South_Korea 27351 T 1632 1632
150 South_Korea 27352 C 1632 1632
151 South_Korea 27353 A 1632 1632
152 South_Korea 27354 A 1632 1632
153 South_Korea 27355 T 1632 1632
154 South_Korea 27356 T 1632 1632
155 South_Korea 27357 A 1632 1632
156 South_Korea 27358 G 1632 1632
157 South_Korea 27359 A 1632 1632
158 South_Korea 27360 T 1632 1632
159 South_Korea 27361 G T 1632 1631 Glu54*
160 South_Korea 27362 A 1632 1632
161 South_Korea 27363 A 1632 1632
162 South_Korea 27364 G 1632 1632
163 South_Korea 27365 A 1632 1632
164 South_Korea 27366 G 1632 1632
165 South_Korea 27367 C 1632 1632
166 South_Korea 27368 A 1632 1632
167 South_Korea 27369 A 1632 1632
168 South_Korea 27370 C 1632 1632
169 South_Korea 27371 C 1632 1632
170 South_Korea 27372 A 1632 1632
171 South_Korea 27373 A 1632 1632
172 South_Korea 27374 T 1632 1632
173 South_Korea 27375 G 1632 1632
174 South_Korea 27376 G 1632 1632
175 South_Korea 27377 A 1632 1632
176 South_Korea 27378 G 1632 1632
177 South_Korea 27379 A 1632 1632
178 South_Korea 27380 T 1632 1632
179 South_Korea 27381 T 1632 1632
180 South_Korea 27382 G T 1632 1628 Asp61Tyr
181 South_Korea 27383 A 1632 1632
182 South_Korea 27384 T 1632 1632
183 South_Korea 27385 T 1632 1632
184 South_Korea 27386 A 1632 1632
185 South_Korea 27387 A 1632 1632