National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F G H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3 1                                    
D     12   3                 1                
E 1   16         1                            
F     9                                      
G                                            
H     3                                      
I     30             1                 1 2    
K     12                                      
L     24                 2                    
M     9             1                        
N     12           1                          
P     3                 1                    
Q 1   9               1                      
R     3                           1          
S     12                                      
T     9                                      
V     9       1                         1    
W     3                 1                    
Y     6                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 27202 A 3050 3050
1 South_Africa 27203 T 3050 3050
2 South_Africa 27204 G T 3050 3049 Met1?
3 South_Africa 27205 T 3050 3050
4 South_Africa 27206 T 3050 3050
5 South_Africa 27207 T 3050 3050
6 South_Africa 27208 C 3050 3050
7 South_Africa 27209 A 3050 3050
8 South_Africa 27210 T 3050 3050
9 South_Africa 27211 C 3050 3050
10 South_Africa 27212 T 3050 3050
11 South_Africa 27213 C T 3050 3034 Leu4Leu
12 South_Africa 27214 G 3050 3050
13 South_Africa 27215 T 3050 3050
14 South_Africa 27216 T 3050 3050
15 South_Africa 27217 G 3050 3050
16 South_Africa 27218 A 3050 3050
17 South_Africa 27219 C T 3050 3049 Asp6Asp
18 South_Africa 27220 T 3050 3050
19 South_Africa 27221 T 3050 3050
20 South_Africa 27222 T 3050 3049
21 South_Africa 27223 C T 3050 3048 Gln8*
22 South_Africa 27224 A 3050 3049
23 South_Africa 27225 G 3050 3049
24 South_Africa 27226 G T 3050 3048 Val9Phe
25 South_Africa 27227 T 3050 3049
26 South_Africa 27228 T C 3050 3048 Val9Val
27 South_Africa 27229 A 3050 3049
28 South_Africa 27230 C 3050 3049
29 South_Africa 27231 T 3050 3050
30 South_Africa 27232 A 3050 3050
31 South_Africa 27233 T 3050 3050
32 South_Africa 27234 A 3050 3050
33 South_Africa 27235 G 3050 3050
34 South_Africa 27236 C 3050 3050
35 South_Africa 27237 A G 3050 3048 Ala12Ala
36 South_Africa 27238 G 3050 3050
37 South_Africa 27239 A 3050 3050
38 South_Africa 27240 G 3050 3050
39 South_Africa 27241 A 3050 3050
40 South_Africa 27242 T 3050 3050
41 South_Africa 27243 A 3050 3050
42 South_Africa 27244 T 3050 3050
43 South_Africa 27245 T 3050 3050
44 South_Africa 27246 A 3050 3050
45 South_Africa 27247 C T 3050 3045 Leu16Leu
46 South_Africa 27248 T 3050 3050
47 South_Africa 27249 A 3050 3050
48 South_Africa 27250 A 3050 3050
49 South_Africa 27251 T 3050 3050
50 South_Africa 27252 T 3050 3050
51 South_Africa 27253 A 3050 3050
52 South_Africa 27254 T 3050 3050
53 South_Africa 27255 T 3050 3050
54 South_Africa 27256 A 3050 3050
55 South_Africa 27257 T 3051 3051
56 South_Africa 27258 G 3051 3051
57 South_Africa 27259 A 3052 3052
58 South_Africa 27260 G 3052 3052
59 South_Africa 27261 G A 3052 3051 Arg20Arg
60 South_Africa 27262 A 3052 3052
61 South_Africa 27263 C 3053 3053
62 South_Africa 27264 T 3053 3053
63 South_Africa 27265 T 3053 3053
64 South_Africa 27266 T 3053 3053
65 South_Africa 27267 T 3053 3053
66 South_Africa 27268 A 3053 3053
67 South_Africa 27269 A 3053 3053
68 South_Africa 27270 A 3053 3053
69 South_Africa 27271 G 3053 3053
70 South_Africa 27272 T 3054 3054
71 South_Africa 27273 T 3054 3054
72 South_Africa 27274 T 3054 3053
73 South_Africa 27275 C 3054 3053
74 South_Africa 27276 C 3054 3053
75 South_Africa 27277 A 3054 3052
76 South_Africa 27278 T 3054 3052
77 South_Africa 27279 T 3054 3052
78 South_Africa 27280 T 3055 3053
79 South_Africa 27281 G T 3056 3051 Trp27Leu
80 South_Africa 27282 G 3056 3055
81 South_Africa 27283 A 3056 3055
82 South_Africa 27284 A 3056 3055
83 South_Africa 27285 T 3056 3055
84 South_Africa 27286 C 3056 3055
85 South_Africa 27287 T 3056 3055
86 South_Africa 27288 T 3056 3055
87 South_Africa 27289 G A 3056 3054 Asp30Asn
88 South_Africa 27290 A 3056 3055
89 South_Africa 27291 T C 3056 3054 Asp30Asp
90 South_Africa 27292 T 3056 3056
91 South_Africa 27293 A 3056 3056
92 South_Africa 27294 C T 3056 3055 Tyr31Tyr
93 South_Africa 27295 A G 3056 3055 Ile32Val
94 South_Africa 27296 T C 3057 3056 Ile32Thr
95 South_Africa 27297 C T 3057 3055 Ile32Ile
96 South_Africa 27298 A 3057 3057
97 South_Africa 27299 T 3057 3057
98 South_Africa 27300 A 3057 3057
99 South_Africa 27301 A 3057 3057
100 South_Africa 27302 A 3057 3057
101 South_Africa 27303 C 3057 3057
102 South_Africa 27304 C 3057 3057
103 South_Africa 27305 T 3057 3057
104 South_Africa 27306 C 3057 3056
105 South_Africa 27307 A 3057 3056
106 South_Africa 27308 T 3057 3056
107 South_Africa 27309 A 3057 3056
108 South_Africa 27310 A 3057 3056
109 South_Africa 27311 T 3057 3056
110 South_Africa 27312 T 3057 3056
111 South_Africa 27313 A 3057 3056
112 South_Africa 27314 A 3057 3056
113 South_Africa 27315 A 3057 3056
114 South_Africa 27316 A C 3057 3048 Asn39His
115 South_Africa 27317 A 3057 3057
116 South_Africa 27318 T 3057 3057
117 South_Africa 27319 T 3057 3057
118 South_Africa 27320 T 3057 3057
119 South_Africa 27321 A 3057 3057
120 South_Africa 27322 T 3057 3057
121 South_Africa 27323 C 3057 3057
122 South_Africa 27324 T 3057 3057
123 South_Africa 27325 A 3057 3057
124 South_Africa 27326 A 3057 3057
125 South_Africa 27327 G 3057 3057
126 South_Africa 27328 T 3057 3057
127 South_Africa 27329 C 3057 3057
128 South_Africa 27330 A 3057 3057
129 South_Africa 27331 C 3057 3057
130 South_Africa 27332 T 3057 3057
131 South_Africa 27333 A 3057 3057
132 South_Africa 27334 A 3057 3057
133 South_Africa 27335 C 3057 3057
134 South_Africa 27336 T 3057 3057
135 South_Africa 27337 G 3057 3057
136 South_Africa 27338 A G 3057 3054 Glu46Gly
137 South_Africa 27339 G 3058 3058
138 South_Africa 27340 A 3058 3058
139 South_Africa 27341 A 3058 3058
140 South_Africa 27342 T 3058 3058
141 South_Africa 27343 A 3058 3058
142 South_Africa 27344 A 3058 3058
143 South_Africa 27345 A 3058 3058
144 South_Africa 27346 T 3058 3058
145 South_Africa 27347 A 3058 3057
146 South_Africa 27348 T 3058 3057
147 South_Africa 27349 T 3058 3057
148 South_Africa 27350 C 3058 3057
149 South_Africa 27351 T 3058 3057
150 South_Africa 27352 C A 3058 3056 Gln51Lys
151 South_Africa 27353 A 3058 3057
152 South_Africa 27354 A 3057 3056
153 South_Africa 27355 T 3057 3056
154 South_Africa 27356 T 3057 3056
155 South_Africa 27357 A 3057 3056
156 South_Africa 27358 G 3057 3056
157 South_Africa 27359 A 3057 3056
158 South_Africa 27360 T 3057 3057
159 South_Africa 27361 G 3057 3057
160 South_Africa 27362 A 3057 3057
161 South_Africa 27363 A 3056 3056
162 South_Africa 27364 G T 3056 3055 Glu55*
163 South_Africa 27365 A 3056 3056
164 South_Africa 27366 G 3056 3056
165 South_Africa 27367 C 3056 3056
166 South_Africa 27368 A 3056 3056
167 South_Africa 27369 A 3056 3056
168 South_Africa 27370 C 3056 3056
169 South_Africa 27371 C T 3056 3054 Pro57Leu
170 South_Africa 27372 A 3056 3056
171 South_Africa 27373 A 3056 3056
172 South_Africa 27374 T 3056 3056
173 South_Africa 27375 G 3056 3056
174 South_Africa 27376 G 3056 3056
175 South_Africa 27377 A 3056 3056
176 South_Africa 27378 G 3055 3055
177 South_Africa 27379 A G 3055 3054 Ile60Val
178 South_Africa 27380 T 3055 3055
179 South_Africa 27381 T 3055 3055
180 South_Africa 27382 G 3052 3052
181 South_Africa 27383 A 3052 3052
182 South_Africa 27384 T C 3052 2912 Asp61Asp
183 South_Africa 27385 T 3052 3052
184 South_Africa 27386 A 3052 3052
185 South_Africa 27387 A 3052 3052