National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 27202 A 96 96
1 Slovakia 27203 T 96 96
2 Slovakia 27204 G 96 96
3 Slovakia 27205 T 96 96
4 Slovakia 27206 T 96 96
5 Slovakia 27207 T 96 96
6 Slovakia 27208 C 96 96
7 Slovakia 27209 A 96 96
8 Slovakia 27210 T 96 96
9 Slovakia 27211 C 96 96
10 Slovakia 27212 T 96 96
11 Slovakia 27213 C 96 96
12 Slovakia 27214 G 96 96
13 Slovakia 27215 T 96 96
14 Slovakia 27216 T 96 96
15 Slovakia 27217 G 96 96
16 Slovakia 27218 A 96 96
17 Slovakia 27219 C 96 96
18 Slovakia 27220 T 96 96
19 Slovakia 27221 T 96 96
20 Slovakia 27222 T 96 96
21 Slovakia 27223 C 96 96
22 Slovakia 27224 A 96 96
23 Slovakia 27225 G 96 96
24 Slovakia 27226 G 96 96
25 Slovakia 27227 T 96 96
26 Slovakia 27228 T 96 96
27 Slovakia 27229 A 96 96
28 Slovakia 27230 C 96 96
29 Slovakia 27231 T 96 96
30 Slovakia 27232 A 96 96
31 Slovakia 27233 T 96 96
32 Slovakia 27234 A 96 96
33 Slovakia 27235 G 96 96
34 Slovakia 27236 C 96 96
35 Slovakia 27237 A 96 96
36 Slovakia 27238 G 96 96
37 Slovakia 27239 A 96 96
38 Slovakia 27240 G 96 96
39 Slovakia 27241 A 96 96
40 Slovakia 27242 T 96 96
41 Slovakia 27243 A 96 96
42 Slovakia 27244 T 96 96
43 Slovakia 27245 T 96 96
44 Slovakia 27246 A 96 96
45 Slovakia 27247 C 96 96
46 Slovakia 27248 T 96 96
47 Slovakia 27249 A 96 96
48 Slovakia 27250 A 96 96
49 Slovakia 27251 T 96 96
50 Slovakia 27252 T 96 96
51 Slovakia 27253 A 96 96
52 Slovakia 27254 T 96 96
53 Slovakia 27255 T 96 96
54 Slovakia 27256 A 96 96
55 Slovakia 27257 T 96 96
56 Slovakia 27258 G 96 96
57 Slovakia 27259 A 96 96
58 Slovakia 27260 G 96 96
59 Slovakia 27261 G 96 96
60 Slovakia 27262 A 96 96
61 Slovakia 27263 C 96 96
62 Slovakia 27264 T 96 96
63 Slovakia 27265 T 96 96
64 Slovakia 27266 T 96 96
65 Slovakia 27267 T 96 96
66 Slovakia 27268 A 96 96
67 Slovakia 27269 A 96 96
68 Slovakia 27270 A 96 96
69 Slovakia 27271 G 96 96
70 Slovakia 27272 T 96 96
71 Slovakia 27273 T 96 96
72 Slovakia 27274 T 96 96
73 Slovakia 27275 C 96 96
74 Slovakia 27276 C 96 96
75 Slovakia 27277 A 96 96
76 Slovakia 27278 T 96 96
77 Slovakia 27279 T 96 96
78 Slovakia 27280 T 96 96
79 Slovakia 27281 G 96 96
80 Slovakia 27282 G 96 96
81 Slovakia 27283 A 96 96
82 Slovakia 27284 A 96 96
83 Slovakia 27285 T 96 96
84 Slovakia 27286 C 96 96
85 Slovakia 27287 T 96 96
86 Slovakia 27288 T 96 96
87 Slovakia 27289 G 96 96
88 Slovakia 27290 A 96 96
89 Slovakia 27291 T 96 96
90 Slovakia 27292 T 96 96
91 Slovakia 27293 A 96 96
92 Slovakia 27294 C 96 96
93 Slovakia 27295 A 96 96
94 Slovakia 27296 T 96 96
95 Slovakia 27297 C 96 96
96 Slovakia 27298 A 96 96
97 Slovakia 27299 T 96 96
98 Slovakia 27300 A 96 96
99 Slovakia 27301 A 96 96
100 Slovakia 27302 A 96 96
101 Slovakia 27303 C 96 96
102 Slovakia 27304 C 96 96
103 Slovakia 27305 T 96 96
104 Slovakia 27306 C 96 96
105 Slovakia 27307 A 96 96
106 Slovakia 27308 T 96 96
107 Slovakia 27309 A 96 96
108 Slovakia 27310 A 96 96
109 Slovakia 27311 T 96 96
110 Slovakia 27312 T 96 96
111 Slovakia 27313 A 96 96
112 Slovakia 27314 A 96 96
113 Slovakia 27315 A 96 96
114 Slovakia 27316 A 96 96
115 Slovakia 27317 A 96 96
116 Slovakia 27318 T 96 96
117 Slovakia 27319 T 96 96
118 Slovakia 27320 T 96 96
119 Slovakia 27321 A 96 96
120 Slovakia 27322 T 96 96
121 Slovakia 27323 C 96 96
122 Slovakia 27324 T 96 96
123 Slovakia 27325 A 96 96
124 Slovakia 27326 A 96 96
125 Slovakia 27327 G 96 96
126 Slovakia 27328 T 96 96
127 Slovakia 27329 C 96 96
128 Slovakia 27330 A 96 96
129 Slovakia 27331 C 96 96
130 Slovakia 27332 T 96 96
131 Slovakia 27333 A 96 96
132 Slovakia 27334 A 96 96
133 Slovakia 27335 C 96 96
134 Slovakia 27336 T 96 96
135 Slovakia 27337 G 96 96
136 Slovakia 27338 A 96 96
137 Slovakia 27339 G 96 96
138 Slovakia 27340 A 96 96
139 Slovakia 27341 A 96 96
140 Slovakia 27342 T 96 96
141 Slovakia 27343 A 96 96
142 Slovakia 27344 A 96 96
143 Slovakia 27345 A 96 96
144 Slovakia 27346 T 96 96
145 Slovakia 27347 A 96 96
146 Slovakia 27348 T 96 96
147 Slovakia 27349 T 96 96
148 Slovakia 27350 C 96 96
149 Slovakia 27351 T 96 96
150 Slovakia 27352 C 96 96
151 Slovakia 27353 A 96 96
152 Slovakia 27354 A 96 96
153 Slovakia 27355 T 96 96
154 Slovakia 27356 T 96 96
155 Slovakia 27357 A 96 96
156 Slovakia 27358 G 96 96
157 Slovakia 27359 A 96 96
158 Slovakia 27360 T 96 96
159 Slovakia 27361 G 96 96
160 Slovakia 27362 A 96 96
161 Slovakia 27363 A 96 96
162 Slovakia 27364 G 96 96
163 Slovakia 27365 A 96 96
164 Slovakia 27366 G 96 96
165 Slovakia 27367 C 96 96
166 Slovakia 27368 A 96 96
167 Slovakia 27369 A 96 96
168 Slovakia 27370 C 96 96
169 Slovakia 27371 C 96 96
170 Slovakia 27372 A 96 96
171 Slovakia 27373 A 96 96
172 Slovakia 27374 T 96 96
173 Slovakia 27375 G 96 96
174 Slovakia 27376 G 96 96
175 Slovakia 27377 A 96 96
176 Slovakia 27378 G 96 96
177 Slovakia 27379 A 96 96
178 Slovakia 27380 T 96 96
179 Slovakia 27381 T 96 96
180 Slovakia 27382 G 96 96
181 Slovakia 27383 A 96 96
182 Slovakia 27384 T 96 96
183 Slovakia 27385 T 96 96
184 Slovakia 27386 A 96 96
185 Slovakia 27387 A 96 96