National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3 1                                  
D     12   2                                
E 1   16   1                                
F     9                                    
H     3                                   1
I     30           1                 2      
K     12                                    
L     24           2   3                    
M     9           1                        
N     12                   1         1      
P     3               1                    
Q     9                     1              
R     3                         1          
S     12 1     1                            
T     9                                    
V     9                                    
W     3               1                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Singapore 27202 A 1731 1731
1 Singapore 27203 T 1731 1731
2 Singapore 27204 G 1731 1731
3 Singapore 27205 T 1731 1731
4 Singapore 27206 T 1731 1731
5 Singapore 27207 T 1731 1731
6 Singapore 27208 C T 1731 1729 His3Tyr
7 Singapore 27209 A 1731 1731
8 Singapore 27210 T 1731 1731
9 Singapore 27211 C A 1731 1730 Leu4Ile
10 Singapore 27212 T 1731 1731
11 Singapore 27213 C T 1731 1725 Leu4Leu
12 Singapore 27214 G 1731 1731
13 Singapore 27215 T 1731 1731
14 Singapore 27216 T 1731 1731
15 Singapore 27217 G 1731 1731
16 Singapore 27218 A 1731 1731
17 Singapore 27219 C T 1731 1717 Asp6Asp
18 Singapore 27220 T 1731 1731
19 Singapore 27221 T 1731 1731
20 Singapore 27222 T 1731 1731
21 Singapore 27223 C 1731 1731
22 Singapore 27224 A C 1731 1729 Gln8Pro
23 Singapore 27225 G 1731 1731
24 Singapore 27226 G 1731 1731
25 Singapore 27227 T 1731 1731
26 Singapore 27228 T 1731 1731
27 Singapore 27229 A 1731 1731
28 Singapore 27230 C 1731 1731
29 Singapore 27231 T 1731 1731
30 Singapore 27232 A 1731 1731
31 Singapore 27233 T 1731 1731
32 Singapore 27234 A 1731 1731
33 Singapore 27235 G 1731 1730
34 Singapore 27236 C 1731 1731
35 Singapore 27237 A G 1731 1729 Ala12Ala
36 Singapore 27238 G T 1731 1730 Glu13*
37 Singapore 27239 A 1731 1731
38 Singapore 27240 G 1731 1731
39 Singapore 27241 A 1731 1731
40 Singapore 27242 T C 1731 1729 Ile14Thr
41 Singapore 27243 A 1731 1731
42 Singapore 27244 T 1731 1731
43 Singapore 27245 T 1731 1731
44 Singapore 27246 A 1731 1730
45 Singapore 27247 C T,A 1731 1729 Leu16Ile-p.Leu16Leu
46 Singapore 27248 T 1731 1731
47 Singapore 27249 A 1731 1731
48 Singapore 27250 A 1731 1731
49 Singapore 27251 T 1731 1731
50 Singapore 27252 T 1731 1731
51 Singapore 27253 A 1731 1731
52 Singapore 27254 T 1731 1731
53 Singapore 27255 T 1731 1731
54 Singapore 27256 A 1731 1731
55 Singapore 27257 T 1731 1731
56 Singapore 27258 G 1731 1731
57 Singapore 27259 A 1731 1731
58 Singapore 27260 G 1731 1731
59 Singapore 27261 G A 1731 1730 Arg20Arg
60 Singapore 27262 A 1731 1731
61 Singapore 27263 C 1731 1731
62 Singapore 27264 T 1731 1731
63 Singapore 27265 T 1731 1731
64 Singapore 27266 T 1731 1731
65 Singapore 27267 T 1731 1731
66 Singapore 27268 A 1731 1731
67 Singapore 27269 A 1731 1731
68 Singapore 27270 A 1731 1731
69 Singapore 27271 G 1731 1731
70 Singapore 27272 T 1731 1731
71 Singapore 27273 T 1731 1731
72 Singapore 27274 T 1731 1731
73 Singapore 27275 C 1731 1731
74 Singapore 27276 C 1731 1731
75 Singapore 27277 A 1731 1730
76 Singapore 27278 T 1731 1731
77 Singapore 27279 T 1731 1731
78 Singapore 27280 T 1731 1731
79 Singapore 27281 G T 1731 1730 Trp27Leu
80 Singapore 27282 G 1731 1730
81 Singapore 27283 A 1731 1731
82 Singapore 27284 A 1731 1731
83 Singapore 27285 T 1731 1731
84 Singapore 27286 C 1731 1731
85 Singapore 27287 T 1731 1731
86 Singapore 27288 T C 1731 1730 Leu29Leu
87 Singapore 27289 G 1731 1731
88 Singapore 27290 A 1731 1731
89 Singapore 27291 T 1731 1731
90 Singapore 27292 T 1731 1731
91 Singapore 27293 A 1731 1731
92 Singapore 27294 C 1731 1731
93 Singapore 27295 A 1731 1731
94 Singapore 27296 T 1731 1731
95 Singapore 27297 C T 1731 1727 Ile32Ile
96 Singapore 27298 A 1731 1731
97 Singapore 27299 T C 1731 1729 Ile33Thr
98 Singapore 27300 A 1731 1731
99 Singapore 27301 A 1731 1731
100 Singapore 27302 A 1731 1731
101 Singapore 27303 C 1731 1731
102 Singapore 27304 C 1731 1731
103 Singapore 27305 T 1731 1731
104 Singapore 27306 C 1731 1731
105 Singapore 27307 A 1731 1731
106 Singapore 27308 T 1731 1731
107 Singapore 27309 A 1731 1731
108 Singapore 27310 A 1731 1731
109 Singapore 27311 T 1731 1731
110 Singapore 27312 T 1731 1731
111 Singapore 27313 A 1731 1731
112 Singapore 27314 A 1731 1731
113 Singapore 27315 A 1731 1731
114 Singapore 27316 A 1731 1731
115 Singapore 27317 A C 1731 1730 Asn39Thr
116 Singapore 27318 T C 1731 1730 Asn39Asn
117 Singapore 27319 T 1731 1731
118 Singapore 27320 T 1731 1731
119 Singapore 27321 A 1731 1731
120 Singapore 27322 T 1731 1730
121 Singapore 27323 C T 1731 1722 Ser41Phe
122 Singapore 27324 T 1731 1731
123 Singapore 27325 A 1731 1731
124 Singapore 27326 A 1731 1731
125 Singapore 27327 G 1731 1731
126 Singapore 27328 T 1731 1731
127 Singapore 27329 C 1731 1731
128 Singapore 27330 A 1731 1731
129 Singapore 27331 C 1731 1731
130 Singapore 27332 T 1731 1731
131 Singapore 27333 A 1731 1731
132 Singapore 27334 A 1731 1731
133 Singapore 27335 C 1731 1731
134 Singapore 27336 T 1731 1731
135 Singapore 27337 G 1731 1731
136 Singapore 27338 A 1731 1731
137 Singapore 27339 G 1731 1731
138 Singapore 27340 A 1731 1731
139 Singapore 27341 A 1731 1731
140 Singapore 27342 T 1731 1731
141 Singapore 27343 A 1731 1731
142 Singapore 27344 A 1731 1731
143 Singapore 27345 A 1731 1731
144 Singapore 27346 T 1731 1731
145 Singapore 27347 A 1731 1731
146 Singapore 27348 T 1731 1731
147 Singapore 27349 T G 1731 1730 Ser50Ala
148 Singapore 27350 C 1731 1731
149 Singapore 27351 T 1731 1731
150 Singapore 27352 C 1731 1731
151 Singapore 27353 A 1731 1731
152 Singapore 27354 A 1731 1731
153 Singapore 27355 T 1731 1731
154 Singapore 27356 T 1731 1731
155 Singapore 27357 A 1731 1731
156 Singapore 27358 G 1731 1731
157 Singapore 27359 A 1731 1730
158 Singapore 27360 T 1731 1731
159 Singapore 27361 G 1731 1731
160 Singapore 27362 A 1731 1731
161 Singapore 27363 A 1731 1731
162 Singapore 27364 G 1731 1731
163 Singapore 27365 A 1731 1731
164 Singapore 27366 G T 1731 1730 Glu55Asp
165 Singapore 27367 C 1731 1731
166 Singapore 27368 A 1731 1731
167 Singapore 27369 A 1731 1731
168 Singapore 27370 C 1731 1731
169 Singapore 27371 C T 1731 1729 Pro57Leu
170 Singapore 27372 A 1731 1731
171 Singapore 27373 A 1731 1731
172 Singapore 27374 T 1731 1731
173 Singapore 27375 G T 1731 1729 Met58Ile
174 Singapore 27376 G 1731 1731
175 Singapore 27377 A 1731 1731
176 Singapore 27378 G 1731 1731
177 Singapore 27379 A 1731 1731
178 Singapore 27380 T 1731 1731
179 Singapore 27381 T 1731 1731
180 Singapore 27382 G 1731 1730
181 Singapore 27383 A 1731 1731
182 Singapore 27384 T C 1731 1724 Asp61Asp
183 Singapore 27385 T 1731 1731
184 Singapore 27386 A 1731 1731
185 Singapore 27387 A 1731 1731