National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E 1   16                                    
F     9                                    
H     3                                   1
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Serbia 27202 A 147 147
1 Serbia 27203 T 147 147
2 Serbia 27204 G 147 147
3 Serbia 27205 T 147 147
4 Serbia 27206 T 147 147
5 Serbia 27207 T 147 147
6 Serbia 27208 C T 147 146 His3Tyr
7 Serbia 27209 A 147 147
8 Serbia 27210 T 147 147
9 Serbia 27211 C 147 147
10 Serbia 27212 T 147 147
11 Serbia 27213 C 147 147
12 Serbia 27214 G 147 147
13 Serbia 27215 T 147 147
14 Serbia 27216 T 147 147
15 Serbia 27217 G 147 147
16 Serbia 27218 A 147 147
17 Serbia 27219 C 147 147
18 Serbia 27220 T 147 147
19 Serbia 27221 T 147 147
20 Serbia 27222 T 147 147
21 Serbia 27223 C 147 147
22 Serbia 27224 A 147 147
23 Serbia 27225 G 147 147
24 Serbia 27226 G 147 147
25 Serbia 27227 T 147 147
26 Serbia 27228 T 147 147
27 Serbia 27229 A 147 147
28 Serbia 27230 C 147 147
29 Serbia 27231 T 147 147
30 Serbia 27232 A 147 147
31 Serbia 27233 T 147 147
32 Serbia 27234 A 147 147
33 Serbia 27235 G 147 147
34 Serbia 27236 C 147 147
35 Serbia 27237 A 147 147
36 Serbia 27238 G 147 147
37 Serbia 27239 A 147 147
38 Serbia 27240 G 147 147
39 Serbia 27241 A 147 147
40 Serbia 27242 T 147 147
41 Serbia 27243 A 147 147
42 Serbia 27244 T 147 147
43 Serbia 27245 T 147 147
44 Serbia 27246 A 147 147
45 Serbia 27247 C 147 147
46 Serbia 27248 T 147 147
47 Serbia 27249 A 147 147
48 Serbia 27250 A 147 147
49 Serbia 27251 T 147 147
50 Serbia 27252 T 147 147
51 Serbia 27253 A 147 147
52 Serbia 27254 T 147 147
53 Serbia 27255 T 147 147
54 Serbia 27256 A 147 147
55 Serbia 27257 T 147 147
56 Serbia 27258 G 147 147
57 Serbia 27259 A 147 147
58 Serbia 27260 G 147 147
59 Serbia 27261 G 147 147
60 Serbia 27262 A 147 147
61 Serbia 27263 C 147 147
62 Serbia 27264 T 147 147
63 Serbia 27265 T 147 147
64 Serbia 27266 T 147 147
65 Serbia 27267 T 147 147
66 Serbia 27268 A 147 147
67 Serbia 27269 A 147 147
68 Serbia 27270 A 147 147
69 Serbia 27271 G 147 147
70 Serbia 27272 T 147 147
71 Serbia 27273 T 147 147
72 Serbia 27274 T 147 147
73 Serbia 27275 C 147 147
74 Serbia 27276 C 147 147
75 Serbia 27277 A 147 147
76 Serbia 27278 T 147 147
77 Serbia 27279 T 147 147
78 Serbia 27280 T 147 147
79 Serbia 27281 G 147 147
80 Serbia 27282 G 147 147
81 Serbia 27283 A 147 147
82 Serbia 27284 A 147 147
83 Serbia 27285 T 147 147
84 Serbia 27286 C 147 147
85 Serbia 27287 T 147 147
86 Serbia 27288 T 147 147
87 Serbia 27289 G 147 147
88 Serbia 27290 A 147 147
89 Serbia 27291 T 147 147
90 Serbia 27292 T 147 147
91 Serbia 27293 A 147 147
92 Serbia 27294 C 147 147
93 Serbia 27295 A 147 147
94 Serbia 27296 T 147 147
95 Serbia 27297 C 147 147
96 Serbia 27298 A 147 147
97 Serbia 27299 T 147 147
98 Serbia 27300 A 147 147
99 Serbia 27301 A 147 147
100 Serbia 27302 A 147 147
101 Serbia 27303 C 147 147
102 Serbia 27304 C 147 147
103 Serbia 27305 T 147 147
104 Serbia 27306 C 147 147
105 Serbia 27307 A 147 147
106 Serbia 27308 T 147 147
107 Serbia 27309 A 147 147
108 Serbia 27310 A 147 147
109 Serbia 27311 T 147 147
110 Serbia 27312 T 147 147
111 Serbia 27313 A 147 147
112 Serbia 27314 A 147 147
113 Serbia 27315 A 147 147
114 Serbia 27316 A 147 147
115 Serbia 27317 A 147 147
116 Serbia 27318 T 147 147
117 Serbia 27319 T 147 147
118 Serbia 27320 T 147 147
119 Serbia 27321 A 147 147
120 Serbia 27322 T 147 147
121 Serbia 27323 C 147 147
122 Serbia 27324 T 147 147
123 Serbia 27325 A 147 147
124 Serbia 27326 A 147 147
125 Serbia 27327 G 147 147
126 Serbia 27328 T 147 147
127 Serbia 27329 C 147 147
128 Serbia 27330 A 147 147
129 Serbia 27331 C 147 147
130 Serbia 27332 T 147 147
131 Serbia 27333 A 147 147
132 Serbia 27334 A 147 147
133 Serbia 27335 C 147 147
134 Serbia 27336 T 147 147
135 Serbia 27337 G 147 147
136 Serbia 27338 A 147 147
137 Serbia 27339 G 147 147
138 Serbia 27340 A 147 147
139 Serbia 27341 A 147 147
140 Serbia 27342 T 147 147
141 Serbia 27343 A 147 147
142 Serbia 27344 A 147 147
143 Serbia 27345 A 147 147
144 Serbia 27346 T 147 147
145 Serbia 27347 A 147 147
146 Serbia 27348 T 147 147
147 Serbia 27349 T 147 147
148 Serbia 27350 C 147 147
149 Serbia 27351 T 147 147
150 Serbia 27352 C 147 147
151 Serbia 27353 A 147 147
152 Serbia 27354 A 147 147
153 Serbia 27355 T 147 147
154 Serbia 27356 T 147 147
155 Serbia 27357 A 147 147
156 Serbia 27358 G 147 147
157 Serbia 27359 A 147 147
158 Serbia 27360 T 147 147
159 Serbia 27361 G 147 147
160 Serbia 27362 A 147 147
161 Serbia 27363 A 147 147
162 Serbia 27364 G T 147 146 Glu55*
163 Serbia 27365 A 147 147
164 Serbia 27366 G 147 147
165 Serbia 27367 C 147 147
166 Serbia 27368 A 147 147
167 Serbia 27369 A 147 147
168 Serbia 27370 C 147 147
169 Serbia 27371 C 147 147
170 Serbia 27372 A 147 147
171 Serbia 27373 A 147 147
172 Serbia 27374 T 147 147
173 Serbia 27375 G 147 147
174 Serbia 27376 G 147 147
175 Serbia 27377 A 147 147
176 Serbia 27378 G 147 147
177 Serbia 27379 A 147 147
178 Serbia 27380 T 147 147
179 Serbia 27381 T 147 147
180 Serbia 27382 G 147 147
181 Serbia 27383 A 147 147
182 Serbia 27384 T 147 147
183 Serbia 27385 T 147 147
184 Serbia 27386 A 147 147
185 Serbia 27387 A 147 147