National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
C                                            
D     12                                      
E     16                                      
F     9                                     1
H     3           1                          
I     30                     1                
K     12                                      
L     24         1 1     1                    
M     9                                      
N     12                                     1
P     3                                      
Q     9                                      
R     3                             1        
S     12                                      
T     9                                      
V     9 1               1                    
W 1   3   1                                  
Y     6                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Senegal 27202 A 134 134
1 Senegal 27203 T 134 134
2 Senegal 27204 G 134 134
3 Senegal 27205 T 134 134
4 Senegal 27206 T 134 134
5 Senegal 27207 T 134 134
6 Senegal 27208 C 134 134
7 Senegal 27209 A 134 134
8 Senegal 27210 T C 134 133 His3His
9 Senegal 27211 C 134 134
10 Senegal 27212 T 134 134
11 Senegal 27213 C T 134 133 Leu4Leu
12 Senegal 27214 G 134 134
13 Senegal 27215 T 134 134
14 Senegal 27216 T 134 134
15 Senegal 27217 G 134 134
16 Senegal 27218 A 134 134
17 Senegal 27219 C 134 134
18 Senegal 27220 T 134 134
19 Senegal 27221 T 134 134
20 Senegal 27222 T 134 134
21 Senegal 27223 C 134 134
22 Senegal 27224 A 134 134
23 Senegal 27225 G 134 134
24 Senegal 27226 G 134 134
25 Senegal 27227 T 134 134
26 Senegal 27228 T 134 134
27 Senegal 27229 A 134 134
28 Senegal 27230 C 134 134
29 Senegal 27231 T 134 134
30 Senegal 27232 A 134 134
31 Senegal 27233 T 134 134
32 Senegal 27234 A 134 134
33 Senegal 27235 G 134 134
34 Senegal 27236 C 134 134
35 Senegal 27237 A 134 134
36 Senegal 27238 G 134 134
37 Senegal 27239 A 134 134
38 Senegal 27240 G 134 134
39 Senegal 27241 A 134 134
40 Senegal 27242 T 134 134
41 Senegal 27243 A 134 134
42 Senegal 27244 T 134 134
43 Senegal 27245 T 134 134
44 Senegal 27246 A 134 134
45 Senegal 27247 C 134 134
46 Senegal 27248 T 134 134
47 Senegal 27249 A 134 134
48 Senegal 27250 A 134 134
49 Senegal 27251 T 134 134
50 Senegal 27252 T 134 134
51 Senegal 27253 A 134 134
52 Senegal 27254 T 134 134
53 Senegal 27255 T 134 134
54 Senegal 27256 A 134 134
55 Senegal 27257 T 134 134
56 Senegal 27258 G 134 134
57 Senegal 27259 A 134 134
58 Senegal 27260 G 134 134
59 Senegal 27261 G T 134 128 Arg20Ser
60 Senegal 27262 A 134 134
61 Senegal 27263 C 134 134
62 Senegal 27264 T 134 134
63 Senegal 27265 T 134 134
64 Senegal 27266 T A 134 133 Phe22Tyr
65 Senegal 27267 T 134 134
66 Senegal 27268 A 134 134
67 Senegal 27269 A 134 134
68 Senegal 27270 A 134 134
69 Senegal 27271 G C 134 133 Val24Leu
70 Senegal 27272 T C 134 133 Val24Ala
71 Senegal 27273 T 134 134
72 Senegal 27274 T 134 133
73 Senegal 27275 C 134 133
74 Senegal 27276 C 134 133
75 Senegal 27277 A 134 134
76 Senegal 27278 T A 134 133 Ile26Asn
77 Senegal 27279 T 134 134
78 Senegal 27280 T 134 134
79 Senegal 27281 G A 134 133 Trp27*
80 Senegal 27282 G T 134 133 Trp27Cys
81 Senegal 27283 A T 134 133 Asn28Tyr
82 Senegal 27284 A 134 134
83 Senegal 27285 T 134 134
84 Senegal 27286 C T 134 133 Leu29Phe
85 Senegal 27287 T A 134 133 Leu29His
86 Senegal 27288 T 134 134
87 Senegal 27289 G 134 134
88 Senegal 27290 A 134 134
89 Senegal 27291 T 134 134
90 Senegal 27292 T 134 134
91 Senegal 27293 A 134 134
92 Senegal 27294 C 134 134
93 Senegal 27295 A 134 134
94 Senegal 27296 T 134 134
95 Senegal 27297 C 134 134
96 Senegal 27298 A 134 134
97 Senegal 27299 T 134 134
98 Senegal 27300 A 134 134
99 Senegal 27301 A 134 134
100 Senegal 27302 A 134 134
101 Senegal 27303 C 134 134
102 Senegal 27304 C 134 134
103 Senegal 27305 T 134 134
104 Senegal 27306 C 134 134
105 Senegal 27307 A 134 134
106 Senegal 27308 T 134 134
107 Senegal 27309 A 134 134
108 Senegal 27310 A 134 134
109 Senegal 27311 T 134 134
110 Senegal 27312 T 134 134
111 Senegal 27313 A 134 134
112 Senegal 27314 A 134 134
113 Senegal 27315 A 134 134
114 Senegal 27316 A 134 134
115 Senegal 27317 A 134 134
116 Senegal 27318 T 134 134
117 Senegal 27319 T 134 134
118 Senegal 27320 T 134 134
119 Senegal 27321 A 134 134
120 Senegal 27322 T 134 134
121 Senegal 27323 C 134 134
122 Senegal 27324 T 134 134
123 Senegal 27325 A 134 134
124 Senegal 27326 A 134 134
125 Senegal 27327 G 134 134
126 Senegal 27328 T 134 134
127 Senegal 27329 C 134 134
128 Senegal 27330 A 134 134
129 Senegal 27331 C 134 134
130 Senegal 27332 T 134 134
131 Senegal 27333 A 134 134
132 Senegal 27334 A 134 134
133 Senegal 27335 C 134 134
134 Senegal 27336 T 134 134
135 Senegal 27337 G 134 134
136 Senegal 27338 A 134 134
137 Senegal 27339 G 134 134
138 Senegal 27340 A 134 134
139 Senegal 27341 A 134 134
140 Senegal 27342 T 134 134
141 Senegal 27343 A 134 134
142 Senegal 27344 A 134 134
143 Senegal 27345 A 134 134
144 Senegal 27346 T 134 134
145 Senegal 27347 A 134 134
146 Senegal 27348 T 134 134
147 Senegal 27349 T 134 134
148 Senegal 27350 C 134 134
149 Senegal 27351 T 134 134
150 Senegal 27352 C 134 134
151 Senegal 27353 A 134 134
152 Senegal 27354 A 134 134
153 Senegal 27355 T 134 134
154 Senegal 27356 T 134 134
155 Senegal 27357 A 134 134
156 Senegal 27358 G 134 134
157 Senegal 27359 A 134 134
158 Senegal 27360 T 134 134
159 Senegal 27361 G 134 134
160 Senegal 27362 A 134 134
161 Senegal 27363 A 134 134
162 Senegal 27364 G 134 134
163 Senegal 27365 A 134 134
164 Senegal 27366 G 134 134
165 Senegal 27367 C 134 134
166 Senegal 27368 A 134 134
167 Senegal 27369 A 134 134
168 Senegal 27370 C 134 134
169 Senegal 27371 C 134 134
170 Senegal 27372 A 134 134
171 Senegal 27373 A 134 134
172 Senegal 27374 T 134 134
173 Senegal 27375 G 134 134
174 Senegal 27376 G 134 134
175 Senegal 27377 A 134 134
176 Senegal 27378 G 134 134
177 Senegal 27379 A 134 134
178 Senegal 27380 T 134 134
179 Senegal 27381 T 134 134
180 Senegal 27382 G 134 134
181 Senegal 27383 A 134 134
182 Senegal 27384 T 134 134
183 Senegal 27385 T 134 134
184 Senegal 27386 A 134 134
185 Senegal 27387 A 134 134