National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     186                                        
?                                              
A     3 1                                      
C                                              
D     12     1                 1                
E 1   16     1     1                            
F     9         1                     1        
G                                              
H     3                                        
I     30               1                   2    
K     12                       1                
L     24         1         3     1              
M     9               1                 1      
N     12                                 1      
P     3                   1                    
Q     9                                        
R     3                               1        
S     12                         2              
T     9                                        
V     9         1                         1    
W     3           1       1                    
Y     6   1         1                         2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 27202 A 1805 1805
1 Russia 27203 T 1805 1805
2 Russia 27204 G T 1805 1804 Met1?
3 Russia 27205 T 1805 1805
4 Russia 27206 T C 1805 1800 Phe2Ser
5 Russia 27207 T 1805 1805
6 Russia 27208 C 1805 1805
7 Russia 27209 A 1806 1806
8 Russia 27210 T 1806 1806
9 Russia 27211 C 1806 1806
10 Russia 27212 T 1806 1806
11 Russia 27213 C T 1806 1798 Leu4Leu
12 Russia 27214 G T 1806 1805 Val5Phe
13 Russia 27215 T 1806 1806
14 Russia 27216 T A 1806 1804 Val5Val
15 Russia 27217 G A 1806 1805 Asp6Asn
16 Russia 27218 A 1806 1806
17 Russia 27219 C 1806 1806
18 Russia 27220 T 1807 1807
19 Russia 27221 T 1807 1807
20 Russia 27222 T C 1807 1801 Phe7Phe
21 Russia 27223 C 1807 1807
22 Russia 27224 A 1807 1807
23 Russia 27225 G 1807 1807
24 Russia 27226 G 1807 1807
25 Russia 27227 T 1807 1807
26 Russia 27228 T 1807 1807
27 Russia 27229 A 1807 1807
28 Russia 27230 C 1807 1807
29 Russia 27231 T 1807 1807
30 Russia 27232 A 1807 1807
31 Russia 27233 T 1807 1807
32 Russia 27234 A 1807 1807
33 Russia 27235 G 1807 1807
34 Russia 27236 C 1807 1807
35 Russia 27237 A G 1807 1806 Ala12Ala
36 Russia 27238 G 1807 1807
37 Russia 27239 A 1807 1807
38 Russia 27240 G T 1808 1807 Glu13Asp
39 Russia 27241 A 1808 1808
40 Russia 27242 T 1808 1808
41 Russia 27243 A 1808 1808
42 Russia 27244 T C 1808 1807 Leu15Leu
43 Russia 27245 T 1808 1808
44 Russia 27246 A 1808 1808
45 Russia 27247 C T 1808 1807 Leu16Leu
46 Russia 27248 T 1808 1808
47 Russia 27249 A 1808 1808
48 Russia 27250 A 1808 1808
49 Russia 27251 T 1808 1808
50 Russia 27252 T 1807 1807
51 Russia 27253 A 1807 1807
52 Russia 27254 T 1807 1807
53 Russia 27255 T 1807 1807
54 Russia 27256 A 1807 1807
55 Russia 27257 T 1807 1807
56 Russia 27258 G 1807 1807
57 Russia 27259 A 1807 1807
58 Russia 27260 G 1807 1807
59 Russia 27261 G T 1807 1799 Arg20Ser
60 Russia 27262 A 1807 1806
61 Russia 27263 C 1807 1806
62 Russia 27264 T 1807 1806
63 Russia 27265 T 1807 1806
64 Russia 27266 T 1806 1804
65 Russia 27267 T 1806 1804
66 Russia 27268 A 1806 1804
67 Russia 27269 A 1806 1804
68 Russia 27270 A 1806 1805
69 Russia 27271 G 1806 1805
70 Russia 27272 T 1806 1805
71 Russia 27273 T 1806 1805
72 Russia 27274 T C 1806 1804 Ser25Pro
73 Russia 27275 C 1806 1805
74 Russia 27276 C 1806 1805
75 Russia 27277 A G 1806 1803 Ile26Val
76 Russia 27278 T 1806 1805
77 Russia 27279 T 1806 1805
78 Russia 27280 T G 1806 1804 Trp27Gly
79 Russia 27281 G T 1806 1804 Trp27Leu
80 Russia 27282 G 1806 1805
81 Russia 27283 A 1806 1805
82 Russia 27284 A 1806 1805
83 Russia 27285 T 1806 1805
84 Russia 27286 C T 1806 1804 Leu29Phe
85 Russia 27287 T C 1806 1804 Leu29Pro
86 Russia 27288 T 1806 1805
87 Russia 27289 G 1806 1805
88 Russia 27290 A 1806 1805
89 Russia 27291 T 1806 1805
90 Russia 27292 T C 1806 1804 Tyr31His
91 Russia 27293 A 1806 1806
92 Russia 27294 C T 1806 1805 Tyr31Tyr
93 Russia 27295 A 1806 1805
94 Russia 27296 T 1806 1806
95 Russia 27297 C T 1806 1801 Ile32Ile
96 Russia 27298 A 1806 1806
97 Russia 27299 T 1806 1806
98 Russia 27300 A 1806 1806
99 Russia 27301 A 1806 1806
100 Russia 27302 A 1806 1806
101 Russia 27303 C 1805 1805
102 Russia 27304 C 1805 1805
103 Russia 27305 T 1805 1805
104 Russia 27306 C 1805 1805
105 Russia 27307 A 1805 1805
106 Russia 27308 T 1805 1805
107 Russia 27309 A 1805 1805
108 Russia 27310 A 1805 1805
109 Russia 27311 T 1805 1805
110 Russia 27312 T 1805 1805
111 Russia 27313 A 1805 1805
112 Russia 27314 A 1805 1805
113 Russia 27315 A 1805 1805
114 Russia 27316 A 1805 1805
115 Russia 27317 A C 1805 1804 Asn39Thr
116 Russia 27318 T 1805 1805
117 Russia 27319 T 1805 1805
118 Russia 27320 T 1806 1806
119 Russia 27321 A 1806 1806
120 Russia 27322 T C 1806 1805 Ser41Pro
121 Russia 27323 C 1806 1806
122 Russia 27324 T 1806 1806
123 Russia 27325 A 1806 1806
124 Russia 27326 A 1806 1806
125 Russia 27327 G T 1806 1803 Lys42Asn
126 Russia 27328 T 1806 1806
127 Russia 27329 C 1806 1806
128 Russia 27330 A 1806 1806
129 Russia 27331 C 1806 1806
130 Russia 27332 T 1806 1806
131 Russia 27333 A 1806 1806
132 Russia 27334 A 1806 1806
133 Russia 27335 C 1806 1806
134 Russia 27336 T 1806 1806
135 Russia 27337 G 1806 1806
136 Russia 27338 A 1806 1806
137 Russia 27339 G 1806 1806
138 Russia 27340 A 1806 1806
139 Russia 27341 A 1804 1804
140 Russia 27342 T 1804 1804
141 Russia 27343 A 1804 1804
142 Russia 27344 A 1804 1804
143 Russia 27345 A 1804 1804
144 Russia 27346 T 1804 1804
145 Russia 27347 A G 1804 1802 Tyr49Cys
146 Russia 27348 T C 1804 1803 Tyr49Tyr
147 Russia 27349 T 1804 1804
148 Russia 27350 C 1804 1804
149 Russia 27351 T 1804 1804
150 Russia 27352 C 1804 1804
151 Russia 27353 A 1804 1804
152 Russia 27354 A 1804 1804
153 Russia 27355 T 1804 1804
154 Russia 27356 T 1804 1804
155 Russia 27357 A 1804 1804
156 Russia 27358 G 1804 1804
157 Russia 27359 A 1804 1804
158 Russia 27360 T 1803 1802
159 Russia 27361 G T 1803 1801 Glu54*
160 Russia 27362 A 1803 1803
161 Russia 27363 A 1803 1803
162 Russia 27364 G 1803 1803
163 Russia 27365 A G 1803 1802 Glu55Gly
164 Russia 27366 G 1803 1803
165 Russia 27367 C 1803 1803
166 Russia 27368 A 1803 1803
167 Russia 27369 A 1803 1803
168 Russia 27370 C 1802 1802
169 Russia 27371 C T 1802 1801 Pro57Leu
170 Russia 27372 A 1802 1802
171 Russia 27373 A 1802 1802
172 Russia 27374 T C 1802 1801 Met58Thr
173 Russia 27375 G 1802 1802
174 Russia 27376 G 1802 1802
175 Russia 27377 A 1802 1802
176 Russia 27378 G 1802 1802
177 Russia 27379 A G 1802 1798 Ile60Val
178 Russia 27380 T 1802 1801
179 Russia 27381 T 1802 1802
180 Russia 27382 G 1801 1801
181 Russia 27383 A 1801 1801
182 Russia 27384 T C 1801 1796 Asp61Asp
183 Russia 27385 T 1801 1801
184 Russia 27386 A 1801 1801
185 Russia 27387 A 1801 1801