National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Republic_of_Congo 27202 A 11 11
1 Republic_of_Congo 27203 T 11 11
2 Republic_of_Congo 27204 G 11 11
3 Republic_of_Congo 27205 T 11 11
4 Republic_of_Congo 27206 T 11 11
5 Republic_of_Congo 27207 T 11 11
6 Republic_of_Congo 27208 C 11 11
7 Republic_of_Congo 27209 A 11 11
8 Republic_of_Congo 27210 T 11 11
9 Republic_of_Congo 27211 C 11 11
10 Republic_of_Congo 27212 T 11 11
11 Republic_of_Congo 27213 C 11 11
12 Republic_of_Congo 27214 G 11 11
13 Republic_of_Congo 27215 T 11 11
14 Republic_of_Congo 27216 T 11 11
15 Republic_of_Congo 27217 G 11 11
16 Republic_of_Congo 27218 A 11 11
17 Republic_of_Congo 27219 C 11 11
18 Republic_of_Congo 27220 T 11 11
19 Republic_of_Congo 27221 T 11 11
20 Republic_of_Congo 27222 T 11 11
21 Republic_of_Congo 27223 C 11 11
22 Republic_of_Congo 27224 A 11 11
23 Republic_of_Congo 27225 G 11 11
24 Republic_of_Congo 27226 G 11 11
25 Republic_of_Congo 27227 T 11 11
26 Republic_of_Congo 27228 T 11 11
27 Republic_of_Congo 27229 A 11 11
28 Republic_of_Congo 27230 C 11 11
29 Republic_of_Congo 27231 T 11 11
30 Republic_of_Congo 27232 A 11 11
31 Republic_of_Congo 27233 T 11 11
32 Republic_of_Congo 27234 A 11 11
33 Republic_of_Congo 27235 G 11 11
34 Republic_of_Congo 27236 C 11 11
35 Republic_of_Congo 27237 A 11 11
36 Republic_of_Congo 27238 G 11 11
37 Republic_of_Congo 27239 A 11 11
38 Republic_of_Congo 27240 G 11 11
39 Republic_of_Congo 27241 A 11 11
40 Republic_of_Congo 27242 T 11 11
41 Republic_of_Congo 27243 A 11 11
42 Republic_of_Congo 27244 T 11 11
43 Republic_of_Congo 27245 T 11 11
44 Republic_of_Congo 27246 A 11 11
45 Republic_of_Congo 27247 C 11 11
46 Republic_of_Congo 27248 T 11 11
47 Republic_of_Congo 27249 A 11 11
48 Republic_of_Congo 27250 A 11 11
49 Republic_of_Congo 27251 T 11 11
50 Republic_of_Congo 27252 T 11 11
51 Republic_of_Congo 27253 A 11 11
52 Republic_of_Congo 27254 T 11 11
53 Republic_of_Congo 27255 T 11 11
54 Republic_of_Congo 27256 A 11 11
55 Republic_of_Congo 27257 T 11 11
56 Republic_of_Congo 27258 G 11 11
57 Republic_of_Congo 27259 A 11 11
58 Republic_of_Congo 27260 G 11 11
59 Republic_of_Congo 27261 G 11 11
60 Republic_of_Congo 27262 A 11 11
61 Republic_of_Congo 27263 C 11 11
62 Republic_of_Congo 27264 T 11 11
63 Republic_of_Congo 27265 T 11 11
64 Republic_of_Congo 27266 T 11 11
65 Republic_of_Congo 27267 T 11 11
66 Republic_of_Congo 27268 A 11 11
67 Republic_of_Congo 27269 A 11 11
68 Republic_of_Congo 27270 A 11 11
69 Republic_of_Congo 27271 G 11 11
70 Republic_of_Congo 27272 T 11 11
71 Republic_of_Congo 27273 T 11 11
72 Republic_of_Congo 27274 T 11 11
73 Republic_of_Congo 27275 C 11 11
74 Republic_of_Congo 27276 C 11 11
75 Republic_of_Congo 27277 A 11 11
76 Republic_of_Congo 27278 T 11 11
77 Republic_of_Congo 27279 T 11 11
78 Republic_of_Congo 27280 T 11 11
79 Republic_of_Congo 27281 G 11 11
80 Republic_of_Congo 27282 G 11 11
81 Republic_of_Congo 27283 A 11 11
82 Republic_of_Congo 27284 A 11 11
83 Republic_of_Congo 27285 T 11 11
84 Republic_of_Congo 27286 C 11 11
85 Republic_of_Congo 27287 T 11 11
86 Republic_of_Congo 27288 T 11 11
87 Republic_of_Congo 27289 G 11 11
88 Republic_of_Congo 27290 A 11 11
89 Republic_of_Congo 27291 T 11 11
90 Republic_of_Congo 27292 T 11 11
91 Republic_of_Congo 27293 A 11 11
92 Republic_of_Congo 27294 C 11 11
93 Republic_of_Congo 27295 A 11 11
94 Republic_of_Congo 27296 T 11 11
95 Republic_of_Congo 27297 C 11 11
96 Republic_of_Congo 27298 A 11 11
97 Republic_of_Congo 27299 T 11 11
98 Republic_of_Congo 27300 A 11 11
99 Republic_of_Congo 27301 A 11 11
100 Republic_of_Congo 27302 A 11 11
101 Republic_of_Congo 27303 C 11 11
102 Republic_of_Congo 27304 C 11 11
103 Republic_of_Congo 27305 T 11 11
104 Republic_of_Congo 27306 C 11 11
105 Republic_of_Congo 27307 A 11 11
106 Republic_of_Congo 27308 T 11 11
107 Republic_of_Congo 27309 A 11 11
108 Republic_of_Congo 27310 A 11 11
109 Republic_of_Congo 27311 T 11 11
110 Republic_of_Congo 27312 T 11 11
111 Republic_of_Congo 27313 A 11 11
112 Republic_of_Congo 27314 A 11 11
113 Republic_of_Congo 27315 A 11 11
114 Republic_of_Congo 27316 A 11 11
115 Republic_of_Congo 27317 A 11 11
116 Republic_of_Congo 27318 T 11 11
117 Republic_of_Congo 27319 T 11 11
118 Republic_of_Congo 27320 T 11 11
119 Republic_of_Congo 27321 A 11 11
120 Republic_of_Congo 27322 T 11 11
121 Republic_of_Congo 27323 C 11 11
122 Republic_of_Congo 27324 T 11 11
123 Republic_of_Congo 27325 A 11 11
124 Republic_of_Congo 27326 A 11 11
125 Republic_of_Congo 27327 G 11 11
126 Republic_of_Congo 27328 T 11 11
127 Republic_of_Congo 27329 C 11 11
128 Republic_of_Congo 27330 A 11 11
129 Republic_of_Congo 27331 C 11 11
130 Republic_of_Congo 27332 T 11 11
131 Republic_of_Congo 27333 A 11 11
132 Republic_of_Congo 27334 A 11 11
133 Republic_of_Congo 27335 C 11 11
134 Republic_of_Congo 27336 T 11 11
135 Republic_of_Congo 27337 G 11 11
136 Republic_of_Congo 27338 A 11 11
137 Republic_of_Congo 27339 G 11 11
138 Republic_of_Congo 27340 A 11 11
139 Republic_of_Congo 27341 A 11 11
140 Republic_of_Congo 27342 T 11 11
141 Republic_of_Congo 27343 A 11 11
142 Republic_of_Congo 27344 A 11 11
143 Republic_of_Congo 27345 A 11 11
144 Republic_of_Congo 27346 T 11 11
145 Republic_of_Congo 27347 A 11 11
146 Republic_of_Congo 27348 T 11 11
147 Republic_of_Congo 27349 T 11 11
148 Republic_of_Congo 27350 C 11 11
149 Republic_of_Congo 27351 T 11 11
150 Republic_of_Congo 27352 C 11 11
151 Republic_of_Congo 27353 A 11 11
152 Republic_of_Congo 27354 A 11 11
153 Republic_of_Congo 27355 T 11 11
154 Republic_of_Congo 27356 T 11 11
155 Republic_of_Congo 27357 A 11 11
156 Republic_of_Congo 27358 G 11 11
157 Republic_of_Congo 27359 A 11 11
158 Republic_of_Congo 27360 T 11 11
159 Republic_of_Congo 27361 G 11 11
160 Republic_of_Congo 27362 A 11 11
161 Republic_of_Congo 27363 A 11 11
162 Republic_of_Congo 27364 G 11 11
163 Republic_of_Congo 27365 A 11 11
164 Republic_of_Congo 27366 G 11 11
165 Republic_of_Congo 27367 C 11 11
166 Republic_of_Congo 27368 A 11 11
167 Republic_of_Congo 27369 A 11 11
168 Republic_of_Congo 27370 C 11 11
169 Republic_of_Congo 27371 C 11 11
170 Republic_of_Congo 27372 A 11 11
171 Republic_of_Congo 27373 A 11 11
172 Republic_of_Congo 27374 T 11 11
173 Republic_of_Congo 27375 G 11 11
174 Republic_of_Congo 27376 G 11 11
175 Republic_of_Congo 27377 A 11 11
176 Republic_of_Congo 27378 G 11 11
177 Republic_of_Congo 27379 A 11 11
178 Republic_of_Congo 27380 T 11 11
179 Republic_of_Congo 27381 T 11 11
180 Republic_of_Congo 27382 G 11 11
181 Republic_of_Congo 27383 A 11 11
182 Republic_of_Congo 27384 T 11 11
183 Republic_of_Congo 27385 T 11 11
184 Republic_of_Congo 27386 A 11 11
185 Republic_of_Congo 27387 A 11 11