National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Qatar 27202 A 16 16
1 Qatar 27203 T 16 16
2 Qatar 27204 G 16 16
3 Qatar 27205 T 16 16
4 Qatar 27206 T 16 16
5 Qatar 27207 T 16 16
6 Qatar 27208 C 16 16
7 Qatar 27209 A 16 16
8 Qatar 27210 T 16 16
9 Qatar 27211 C 16 16
10 Qatar 27212 T 16 16
11 Qatar 27213 C 16 16
12 Qatar 27214 G 16 16
13 Qatar 27215 T 16 16
14 Qatar 27216 T 16 16
15 Qatar 27217 G 16 16
16 Qatar 27218 A 16 16
17 Qatar 27219 C 16 16
18 Qatar 27220 T 16 16
19 Qatar 27221 T 16 16
20 Qatar 27222 T 16 16
21 Qatar 27223 C 16 16
22 Qatar 27224 A 16 16
23 Qatar 27225 G 16 16
24 Qatar 27226 G 16 16
25 Qatar 27227 T 16 16
26 Qatar 27228 T 16 16
27 Qatar 27229 A 16 16
28 Qatar 27230 C 16 16
29 Qatar 27231 T 16 16
30 Qatar 27232 A 16 16
31 Qatar 27233 T 16 16
32 Qatar 27234 A 16 16
33 Qatar 27235 G 16 16
34 Qatar 27236 C 16 16
35 Qatar 27237 A 16 16
36 Qatar 27238 G 16 16
37 Qatar 27239 A 16 16
38 Qatar 27240 G 16 16
39 Qatar 27241 A 16 16
40 Qatar 27242 T 16 16
41 Qatar 27243 A 16 16
42 Qatar 27244 T 16 16
43 Qatar 27245 T 16 16
44 Qatar 27246 A 16 16
45 Qatar 27247 C 16 16
46 Qatar 27248 T 16 16
47 Qatar 27249 A 16 16
48 Qatar 27250 A 16 16
49 Qatar 27251 T 16 16
50 Qatar 27252 T 16 16
51 Qatar 27253 A 16 16
52 Qatar 27254 T 16 16
53 Qatar 27255 T 16 16
54 Qatar 27256 A 16 16
55 Qatar 27257 T 16 16
56 Qatar 27258 G 16 16
57 Qatar 27259 A 16 16
58 Qatar 27260 G 16 16
59 Qatar 27261 G 16 16
60 Qatar 27262 A 16 16
61 Qatar 27263 C 16 16
62 Qatar 27264 T 16 16
63 Qatar 27265 T 16 16
64 Qatar 27266 T 16 16
65 Qatar 27267 T 16 16
66 Qatar 27268 A 16 16
67 Qatar 27269 A 16 16
68 Qatar 27270 A 16 16
69 Qatar 27271 G 16 16
70 Qatar 27272 T 16 16
71 Qatar 27273 T 16 16
72 Qatar 27274 T 16 16
73 Qatar 27275 C 16 16
74 Qatar 27276 C 16 16
75 Qatar 27277 A 16 16
76 Qatar 27278 T 16 16
77 Qatar 27279 T 16 16
78 Qatar 27280 T 16 16
79 Qatar 27281 G 16 16
80 Qatar 27282 G 16 16
81 Qatar 27283 A 16 16
82 Qatar 27284 A 16 16
83 Qatar 27285 T 16 16
84 Qatar 27286 C 16 16
85 Qatar 27287 T 16 16
86 Qatar 27288 T 16 16
87 Qatar 27289 G 16 16
88 Qatar 27290 A 16 16
89 Qatar 27291 T 16 16
90 Qatar 27292 T 16 16
91 Qatar 27293 A 16 16
92 Qatar 27294 C 16 16
93 Qatar 27295 A 16 16
94 Qatar 27296 T 16 16
95 Qatar 27297 C 16 16
96 Qatar 27298 A 16 16
97 Qatar 27299 T 16 16
98 Qatar 27300 A 16 16
99 Qatar 27301 A 16 16
100 Qatar 27302 A 16 16
101 Qatar 27303 C 16 16
102 Qatar 27304 C 16 16
103 Qatar 27305 T 16 16
104 Qatar 27306 C 16 16
105 Qatar 27307 A 16 16
106 Qatar 27308 T 16 16
107 Qatar 27309 A 16 16
108 Qatar 27310 A 16 16
109 Qatar 27311 T 16 16
110 Qatar 27312 T 16 16
111 Qatar 27313 A 16 16
112 Qatar 27314 A 16 16
113 Qatar 27315 A 16 16
114 Qatar 27316 A 16 16
115 Qatar 27317 A 16 16
116 Qatar 27318 T 16 16
117 Qatar 27319 T 16 16
118 Qatar 27320 T 16 16
119 Qatar 27321 A 16 16
120 Qatar 27322 T 16 16
121 Qatar 27323 C 16 16
122 Qatar 27324 T 16 16
123 Qatar 27325 A 16 16
124 Qatar 27326 A 16 16
125 Qatar 27327 G 16 16
126 Qatar 27328 T 16 16
127 Qatar 27329 C 16 16
128 Qatar 27330 A 16 16
129 Qatar 27331 C 16 16
130 Qatar 27332 T 16 16
131 Qatar 27333 A 16 16
132 Qatar 27334 A 16 16
133 Qatar 27335 C 16 16
134 Qatar 27336 T 16 16
135 Qatar 27337 G 16 16
136 Qatar 27338 A 16 16
137 Qatar 27339 G 16 16
138 Qatar 27340 A 16 16
139 Qatar 27341 A 16 16
140 Qatar 27342 T 16 16
141 Qatar 27343 A 16 16
142 Qatar 27344 A 16 16
143 Qatar 27345 A 16 16
144 Qatar 27346 T 16 16
145 Qatar 27347 A 16 16
146 Qatar 27348 T 16 16
147 Qatar 27349 T 16 16
148 Qatar 27350 C 16 16
149 Qatar 27351 T 16 16
150 Qatar 27352 C 16 16
151 Qatar 27353 A 16 16
152 Qatar 27354 A 16 16
153 Qatar 27355 T 16 16
154 Qatar 27356 T 16 16
155 Qatar 27357 A 16 16
156 Qatar 27358 G 16 16
157 Qatar 27359 A 16 16
158 Qatar 27360 T 16 16
159 Qatar 27361 G 16 16
160 Qatar 27362 A 16 16
161 Qatar 27363 A 16 16
162 Qatar 27364 G 16 16
163 Qatar 27365 A 16 16
164 Qatar 27366 G 16 16
165 Qatar 27367 C 16 16
166 Qatar 27368 A 16 16
167 Qatar 27369 A 16 16
168 Qatar 27370 C 16 16
169 Qatar 27371 C 16 16
170 Qatar 27372 A 16 16
171 Qatar 27373 A 16 16
172 Qatar 27374 T 16 16
173 Qatar 27375 G 16 16
174 Qatar 27376 G 16 16
175 Qatar 27377 A 16 16
176 Qatar 27378 G 16 16
177 Qatar 27379 A 16 16
178 Qatar 27380 T 16 16
179 Qatar 27381 T 16 16
180 Qatar 27382 G 16 16
181 Qatar 27383 A 16 16
182 Qatar 27384 T 16 16
183 Qatar 27385 T 16 16
184 Qatar 27386 A 16 16
185 Qatar 27387 A 16 16