National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16   1                                
F     9               1                    
H     3                                    
I     30           2                        
K     12                                    
L     24               2                    
M     9           1                        
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9           1                        
V     9                                    
W     3               1                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Poland 27202 A 434 434
1 Poland 27203 T 434 434
2 Poland 27204 G T 434 433 Met1?
3 Poland 27205 T 434 434
4 Poland 27206 T 434 434
5 Poland 27207 T 434 434
6 Poland 27208 C 434 434
7 Poland 27209 A 434 434
8 Poland 27210 T 434 434
9 Poland 27211 C 434 434
10 Poland 27212 T 434 434
11 Poland 27213 C 434 434
12 Poland 27214 G 434 434
13 Poland 27215 T 434 434
14 Poland 27216 T 434 434
15 Poland 27217 G 434 434
16 Poland 27218 A 434 434
17 Poland 27219 C 434 434
18 Poland 27220 T C 434 422 Phe7Leu
19 Poland 27221 T 434 434
20 Poland 27222 T 434 434
21 Poland 27223 C 434 434
22 Poland 27224 A 434 434
23 Poland 27225 G 434 434
24 Poland 27226 G 434 434
25 Poland 27227 T 434 434
26 Poland 27228 T 434 434
27 Poland 27229 A 434 434
28 Poland 27230 C 434 434
29 Poland 27231 T 434 434
30 Poland 27232 A 434 434
31 Poland 27233 T 434 434
32 Poland 27234 A 434 434
33 Poland 27235 G 434 434
34 Poland 27236 C 434 434
35 Poland 27237 A 434 434
36 Poland 27238 G 434 434
37 Poland 27239 A 434 434
38 Poland 27240 G T 434 433 Glu13Asp
39 Poland 27241 A 434 434
40 Poland 27242 T 434 434
41 Poland 27243 A 434 434
42 Poland 27244 T C 434 433 Leu15Leu
43 Poland 27245 T 434 434
44 Poland 27246 A 434 434
45 Poland 27247 C 434 434
46 Poland 27248 T 434 434
47 Poland 27249 A 434 434
48 Poland 27250 A 434 434
49 Poland 27251 T 434 434
50 Poland 27252 T 434 434
51 Poland 27253 A 434 434
52 Poland 27254 T 434 434
53 Poland 27255 T 434 434
54 Poland 27256 A 434 434
55 Poland 27257 T 434 434
56 Poland 27258 G 434 434
57 Poland 27259 A 434 434
58 Poland 27260 G 434 434
59 Poland 27261 G 434 434
60 Poland 27262 A 434 434
61 Poland 27263 C T 434 433 Thr21Ile
62 Poland 27264 T 434 434
63 Poland 27265 T 434 434
64 Poland 27266 T 434 434
65 Poland 27267 T 434 434
66 Poland 27268 A 434 434
67 Poland 27269 A 434 434
68 Poland 27270 A 434 434
69 Poland 27271 G 434 434
70 Poland 27272 T 434 434
71 Poland 27273 T 434 434
72 Poland 27274 T 434 434
73 Poland 27275 C 434 434
74 Poland 27276 C 434 434
75 Poland 27277 A 434 434
76 Poland 27278 T 434 434
77 Poland 27279 T 434 434
78 Poland 27280 T 434 434
79 Poland 27281 G T 434 433 Trp27Leu
80 Poland 27282 G 434 434
81 Poland 27283 A 434 434
82 Poland 27284 A 434 434
83 Poland 27285 T 434 434
84 Poland 27286 C 434 434
85 Poland 27287 T 434 434
86 Poland 27288 T 434 434
87 Poland 27289 G 434 434
88 Poland 27290 A 434 434
89 Poland 27291 T 434 434
90 Poland 27292 T 434 434
91 Poland 27293 A 434 434
92 Poland 27294 C 434 434
93 Poland 27295 A 434 434
94 Poland 27296 T 434 434
95 Poland 27297 C T 434 433 Ile32Ile
96 Poland 27298 A 434 434
97 Poland 27299 T 434 434
98 Poland 27300 A 434 434
99 Poland 27301 A 434 434
100 Poland 27302 A 434 434
101 Poland 27303 C 434 434
102 Poland 27304 C 434 434
103 Poland 27305 T 434 434
104 Poland 27306 C 434 434
105 Poland 27307 A 434 434
106 Poland 27308 T 434 434
107 Poland 27309 A 434 434
108 Poland 27310 A 434 434
109 Poland 27311 T 434 434
110 Poland 27312 T 434 434
111 Poland 27313 A 434 434
112 Poland 27314 A 434 434
113 Poland 27315 A 434 434
114 Poland 27316 A 434 434
115 Poland 27317 A 434 434
116 Poland 27318 T 434 434
117 Poland 27319 T 434 434
118 Poland 27320 T 434 434
119 Poland 27321 A G 434 433 Leu40Leu
120 Poland 27322 T 434 434
121 Poland 27323 C 434 434
122 Poland 27324 T 434 434
123 Poland 27325 A 434 434
124 Poland 27326 A 434 434
125 Poland 27327 G 434 434
126 Poland 27328 T 434 434
127 Poland 27329 C 434 434
128 Poland 27330 A 434 434
129 Poland 27331 C 434 434
130 Poland 27332 T 434 434
131 Poland 27333 A 434 434
132 Poland 27334 A 434 434
133 Poland 27335 C 434 434
134 Poland 27336 T 434 434
135 Poland 27337 G 434 434
136 Poland 27338 A 434 434
137 Poland 27339 G 434 434
138 Poland 27340 A 434 434
139 Poland 27341 A 434 434
140 Poland 27342 T 434 434
141 Poland 27343 A 434 434
142 Poland 27344 A 434 434
143 Poland 27345 A 434 434
144 Poland 27346 T 434 434
145 Poland 27347 A 434 434
146 Poland 27348 T 434 434
147 Poland 27349 T 434 434
148 Poland 27350 C 434 434
149 Poland 27351 T 434 434
150 Poland 27352 C 434 434
151 Poland 27353 A 434 434
152 Poland 27354 A 434 434
153 Poland 27355 T 434 434
154 Poland 27356 T 434 434
155 Poland 27357 A 434 434
156 Poland 27358 G 434 434
157 Poland 27359 A 434 434
158 Poland 27360 T 434 434
159 Poland 27361 G 434 434
160 Poland 27362 A 434 434
161 Poland 27363 A 434 434
162 Poland 27364 G 434 434
163 Poland 27365 A 434 434
164 Poland 27366 G 434 434
165 Poland 27367 C 434 434
166 Poland 27368 A 434 434
167 Poland 27369 A 434 434
168 Poland 27370 C 434 434
169 Poland 27371 C 434 434
170 Poland 27372 A 434 434
171 Poland 27373 A 434 434
172 Poland 27374 T 434 434
173 Poland 27375 G 434 434
174 Poland 27376 G 434 434
175 Poland 27377 A 434 434
176 Poland 27378 G 434 434
177 Poland 27379 A 434 434
178 Poland 27380 T 434 434
179 Poland 27381 T A 434 433 Ile60Ile
180 Poland 27382 G 434 434
181 Poland 27383 A 434 434
182 Poland 27384 T 434 434
183 Poland 27385 T 434 434
184 Poland 27386 A 434 434
185 Poland 27387 A 434 434