National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16   1                                
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Philippines 27202 A 33 33
1 Philippines 27203 T 33 33
2 Philippines 27204 G 33 33
3 Philippines 27205 T 33 33
4 Philippines 27206 T 33 33
5 Philippines 27207 T 33 33
6 Philippines 27208 C 33 33
7 Philippines 27209 A 33 33
8 Philippines 27210 T 33 33
9 Philippines 27211 C 33 33
10 Philippines 27212 T 33 33
11 Philippines 27213 C 33 33
12 Philippines 27214 G 33 33
13 Philippines 27215 T 33 33
14 Philippines 27216 T 33 33
15 Philippines 27217 G 33 33
16 Philippines 27218 A 33 33
17 Philippines 27219 C 33 33
18 Philippines 27220 T 33 33
19 Philippines 27221 T 33 33
20 Philippines 27222 T 33 33
21 Philippines 27223 C 33 33
22 Philippines 27224 A 33 33
23 Philippines 27225 G 33 33
24 Philippines 27226 G 33 33
25 Philippines 27227 T 33 33
26 Philippines 27228 T 33 33
27 Philippines 27229 A 33 33
28 Philippines 27230 C 33 33
29 Philippines 27231 T 33 33
30 Philippines 27232 A 33 33
31 Philippines 27233 T 33 33
32 Philippines 27234 A 33 33
33 Philippines 27235 G 33 33
34 Philippines 27236 C 33 33
35 Philippines 27237 A 33 33
36 Philippines 27238 G 33 33
37 Philippines 27239 A 33 33
38 Philippines 27240 G T 33 32 Glu13Asp
39 Philippines 27241 A 33 33
40 Philippines 27242 T 33 33
41 Philippines 27243 A 33 33
42 Philippines 27244 T 33 33
43 Philippines 27245 T 33 33
44 Philippines 27246 A 33 33
45 Philippines 27247 C 33 33
46 Philippines 27248 T 33 33
47 Philippines 27249 A 33 33
48 Philippines 27250 A 33 33
49 Philippines 27251 T 33 33
50 Philippines 27252 T 33 33
51 Philippines 27253 A 33 33
52 Philippines 27254 T 33 33
53 Philippines 27255 T 33 33
54 Philippines 27256 A 33 33
55 Philippines 27257 T 33 33
56 Philippines 27258 G 33 33
57 Philippines 27259 A 33 33
58 Philippines 27260 G 33 33
59 Philippines 27261 G 33 33
60 Philippines 27262 A 33 33
61 Philippines 27263 C 33 33
62 Philippines 27264 T 33 33
63 Philippines 27265 T 33 33
64 Philippines 27266 T 33 33
65 Philippines 27267 T 33 33
66 Philippines 27268 A 33 33
67 Philippines 27269 A 33 33
68 Philippines 27270 A 33 33
69 Philippines 27271 G 33 33
70 Philippines 27272 T 33 33
71 Philippines 27273 T 33 33
72 Philippines 27274 T 33 33
73 Philippines 27275 C 33 33
74 Philippines 27276 C 33 33
75 Philippines 27277 A 33 33
76 Philippines 27278 T 33 33
77 Philippines 27279 T 33 33
78 Philippines 27280 T 33 33
79 Philippines 27281 G 33 33
80 Philippines 27282 G 33 33
81 Philippines 27283 A 33 33
82 Philippines 27284 A 33 33
83 Philippines 27285 T 33 33
84 Philippines 27286 C 33 33
85 Philippines 27287 T 33 33
86 Philippines 27288 T 33 33
87 Philippines 27289 G 33 33
88 Philippines 27290 A 33 33
89 Philippines 27291 T 33 33
90 Philippines 27292 T 33 33
91 Philippines 27293 A 33 33
92 Philippines 27294 C 33 33
93 Philippines 27295 A 33 33
94 Philippines 27296 T 33 33
95 Philippines 27297 C 33 33
96 Philippines 27298 A 33 33
97 Philippines 27299 T 33 33
98 Philippines 27300 A 33 33
99 Philippines 27301 A 33 33
100 Philippines 27302 A 33 33
101 Philippines 27303 C 33 33
102 Philippines 27304 C 33 33
103 Philippines 27305 T 33 33
104 Philippines 27306 C 33 33
105 Philippines 27307 A 33 33
106 Philippines 27308 T 33 33
107 Philippines 27309 A 33 33
108 Philippines 27310 A 33 33
109 Philippines 27311 T 33 33
110 Philippines 27312 T 33 33
111 Philippines 27313 A 33 33
112 Philippines 27314 A 33 33
113 Philippines 27315 A 33 33
114 Philippines 27316 A 33 33
115 Philippines 27317 A 33 33
116 Philippines 27318 T 33 33
117 Philippines 27319 T 33 33
118 Philippines 27320 T 33 33
119 Philippines 27321 A 33 33
120 Philippines 27322 T 33 33
121 Philippines 27323 C 33 33
122 Philippines 27324 T 33 33
123 Philippines 27325 A 33 33
124 Philippines 27326 A 33 33
125 Philippines 27327 G 33 33
126 Philippines 27328 T 33 33
127 Philippines 27329 C 33 33
128 Philippines 27330 A 33 33
129 Philippines 27331 C 33 33
130 Philippines 27332 T 33 33
131 Philippines 27333 A 33 33
132 Philippines 27334 A 33 33
133 Philippines 27335 C 33 33
134 Philippines 27336 T 33 33
135 Philippines 27337 G 33 33
136 Philippines 27338 A 33 33
137 Philippines 27339 G 33 33
138 Philippines 27340 A 33 33
139 Philippines 27341 A 33 33
140 Philippines 27342 T 33 33
141 Philippines 27343 A 33 33
142 Philippines 27344 A 33 33
143 Philippines 27345 A 33 33
144 Philippines 27346 T 33 33
145 Philippines 27347 A 33 33
146 Philippines 27348 T 33 33
147 Philippines 27349 T 33 33
148 Philippines 27350 C 33 33
149 Philippines 27351 T 33 33
150 Philippines 27352 C 33 33
151 Philippines 27353 A 33 33
152 Philippines 27354 A 33 33
153 Philippines 27355 T 33 33
154 Philippines 27356 T 33 33
155 Philippines 27357 A 33 33
156 Philippines 27358 G 33 33
157 Philippines 27359 A 33 33
158 Philippines 27360 T 33 33
159 Philippines 27361 G 33 33
160 Philippines 27362 A 33 33
161 Philippines 27363 A 33 33
162 Philippines 27364 G 33 33
163 Philippines 27365 A 33 33
164 Philippines 27366 G 33 33
165 Philippines 27367 C 33 33
166 Philippines 27368 A 33 33
167 Philippines 27369 A 33 33
168 Philippines 27370 C 33 33
169 Philippines 27371 C 33 33
170 Philippines 27372 A 33 33
171 Philippines 27373 A 33 33
172 Philippines 27374 T 33 33
173 Philippines 27375 G 33 33
174 Philippines 27376 G 33 33
175 Philippines 27377 A 33 33
176 Philippines 27378 G 33 33
177 Philippines 27379 A 33 33
178 Philippines 27380 T 33 33
179 Philippines 27381 T 33 33
180 Philippines 27382 G 33 33
181 Philippines 27383 A 33 33
182 Philippines 27384 T 33 33
183 Philippines 27385 T 33 33
184 Philippines 27386 A 33 33
185 Philippines 27387 A 33 33