National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1               1                
E     16                                    
F     9       1                            
H     3                                   1
I     30                                    
K     12                                    
L     24               1                    
M     9                                    
N     12             1                      
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9           1                        
V     9                                    
W     3               1                    
Y     6         1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Peru 27202 A 528 528
1 Peru 27203 T 528 528
2 Peru 27204 G 528 528
3 Peru 27205 T 528 528
4 Peru 27206 T 528 528
5 Peru 27207 T C 528 527 Phe2Phe
6 Peru 27208 C T 528 527 His3Tyr
7 Peru 27209 A 528 528
8 Peru 27210 T 528 528
9 Peru 27211 C 528 528
10 Peru 27212 T 528 528
11 Peru 27213 C T 528 519 Leu4Leu
12 Peru 27214 G 528 528
13 Peru 27215 T 528 528
14 Peru 27216 T 528 528
15 Peru 27217 G A 528 527 Asp6Asn
16 Peru 27218 A 528 528
17 Peru 27219 C 528 528
18 Peru 27220 T 528 528
19 Peru 27221 T 528 528
20 Peru 27222 T 528 528
21 Peru 27223 C 528 528
22 Peru 27224 A 528 528
23 Peru 27225 G 528 528
24 Peru 27226 G 528 528
25 Peru 27227 T 528 528
26 Peru 27228 T 528 528
27 Peru 27229 A 528 528
28 Peru 27230 C T 528 527 Thr10Ile
29 Peru 27231 T 528 528
30 Peru 27232 A 528 528
31 Peru 27233 T 528 528
32 Peru 27234 A 528 528
33 Peru 27235 G 528 528
34 Peru 27236 C 528 528
35 Peru 27237 A 528 528
36 Peru 27238 G 528 528
37 Peru 27239 A 528 528
38 Peru 27240 G 528 528
39 Peru 27241 A 528 528
40 Peru 27242 T 528 528
41 Peru 27243 A 528 528
42 Peru 27244 T 528 528
43 Peru 27245 T 528 528
44 Peru 27246 A 528 528
45 Peru 27247 C 528 528
46 Peru 27248 T 528 528
47 Peru 27249 A 528 528
48 Peru 27250 A 528 528
49 Peru 27251 T 528 528
50 Peru 27252 T 528 528
51 Peru 27253 A 528 528
52 Peru 27254 T 528 528
53 Peru 27255 T 528 528
54 Peru 27256 A 528 528
55 Peru 27257 T 528 528
56 Peru 27258 G 528 528
57 Peru 27259 A 528 528
58 Peru 27260 G 528 528
59 Peru 27261 G 528 528
60 Peru 27262 A 528 528
61 Peru 27263 C 528 528
62 Peru 27264 T 528 528
63 Peru 27265 T 528 528
64 Peru 27266 T 528 528
65 Peru 27267 T 528 528
66 Peru 27268 A 528 528
67 Peru 27269 A 528 528
68 Peru 27270 A 528 528
69 Peru 27271 G 528 528
70 Peru 27272 T 528 528
71 Peru 27273 T 528 528
72 Peru 27274 T 528 528
73 Peru 27275 C 528 528
74 Peru 27276 C 528 528
75 Peru 27277 A 528 528
76 Peru 27278 T 528 528
77 Peru 27279 T 528 528
78 Peru 27280 T 528 528
79 Peru 27281 G T 528 527 Trp27Leu
80 Peru 27282 G 528 528
81 Peru 27283 A 528 528
82 Peru 27284 A 528 528
83 Peru 27285 T 528 528
84 Peru 27286 C 528 528
85 Peru 27287 T 528 528
86 Peru 27288 T 528 528
87 Peru 27289 G 528 528
88 Peru 27290 A 528 528
89 Peru 27291 T 528 528
90 Peru 27292 T 528 528
91 Peru 27293 A 528 528
92 Peru 27294 C T 528 527 Tyr31Tyr
93 Peru 27295 A 528 528
94 Peru 27296 T 528 528
95 Peru 27297 C 528 528
96 Peru 27298 A 528 528
97 Peru 27299 T 528 528
98 Peru 27300 A 528 528
99 Peru 27301 A 528 528
100 Peru 27302 A 528 528
101 Peru 27303 C A 528 527 Asn34Lys
102 Peru 27304 C 528 528
103 Peru 27305 T 528 528
104 Peru 27306 C 528 528
105 Peru 27307 A 528 528
106 Peru 27308 T 528 527
107 Peru 27309 A 528 528
108 Peru 27310 A 528 528
109 Peru 27311 T 528 528
110 Peru 27312 T 528 528
111 Peru 27313 A 528 528
112 Peru 27314 A 528 528
113 Peru 27315 A 528 528
114 Peru 27316 A 528 528
115 Peru 27317 A 528 528
116 Peru 27318 T 528 528
117 Peru 27319 T 528 528
118 Peru 27320 T 528 528
119 Peru 27321 A 528 528
120 Peru 27322 T 528 528
121 Peru 27323 C 528 528
122 Peru 27324 T 528 528
123 Peru 27325 A 528 528
124 Peru 27326 A 528 528
125 Peru 27327 G 528 528
126 Peru 27328 T 528 528
127 Peru 27329 C 528 528
128 Peru 27330 A 528 528
129 Peru 27331 C 528 528
130 Peru 27332 T 528 528
131 Peru 27333 A 528 528
132 Peru 27334 A 528 528
133 Peru 27335 C 528 528
134 Peru 27336 T 528 528
135 Peru 27337 G 528 528
136 Peru 27338 A 528 528
137 Peru 27339 G 528 528
138 Peru 27340 A 528 528
139 Peru 27341 A 528 528
140 Peru 27342 T 528 528
141 Peru 27343 A 528 528
142 Peru 27344 A 528 528
143 Peru 27345 A 528 528
144 Peru 27346 T C 528 527 Tyr49His
145 Peru 27347 A 528 528
146 Peru 27348 T 528 528
147 Peru 27349 T 528 528
148 Peru 27350 C 528 528
149 Peru 27351 T 528 528
150 Peru 27352 C 528 528
151 Peru 27353 A 528 528
152 Peru 27354 A 528 528
153 Peru 27355 T 528 528
154 Peru 27356 T 528 528
155 Peru 27357 A 528 528
156 Peru 27358 G 528 528
157 Peru 27359 A 528 528
158 Peru 27360 T 528 528
159 Peru 27361 G 528 528
160 Peru 27362 A 528 528
161 Peru 27363 A 528 528
162 Peru 27364 G 528 528
163 Peru 27365 A 528 528
164 Peru 27366 G 528 528
165 Peru 27367 C 528 528
166 Peru 27368 A 528 528
167 Peru 27369 A 528 528
168 Peru 27370 C 528 528
169 Peru 27371 C 528 528
170 Peru 27372 A 528 528
171 Peru 27373 A 528 528
172 Peru 27374 T 528 528
173 Peru 27375 G 528 528
174 Peru 27376 G 528 528
175 Peru 27377 A 528 528
176 Peru 27378 G 528 528
177 Peru 27379 A 528 528
178 Peru 27380 T 528 528
179 Peru 27381 T 528 528
180 Peru 27382 G 526 526
181 Peru 27383 A 526 526
182 Peru 27384 T C 526 524 Asp61Asp
183 Peru 27385 T 526 526
184 Peru 27386 A 526 526
185 Peru 27387 A 526 526