National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1                                
E     16                                    
F     9                                    
H     3                                    
I     30           1                        
K     12                                    
L     24                               1    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 27202 A 57 57
1 Pakistan 27203 T 57 57
2 Pakistan 27204 G 57 57
3 Pakistan 27205 T 57 57
4 Pakistan 27206 T 57 57
5 Pakistan 27207 T 57 57
6 Pakistan 27208 C 57 57
7 Pakistan 27209 A 57 57
8 Pakistan 27210 T 57 57
9 Pakistan 27211 C 57 57
10 Pakistan 27212 T 57 57
11 Pakistan 27213 C 57 57
12 Pakistan 27214 G 57 57
13 Pakistan 27215 T 57 57
14 Pakistan 27216 T 57 57
15 Pakistan 27217 G 57 57
16 Pakistan 27218 A 57 57
17 Pakistan 27219 C 57 57
18 Pakistan 27220 T 57 57
19 Pakistan 27221 T 57 57
20 Pakistan 27222 T 57 57
21 Pakistan 27223 C 57 57
22 Pakistan 27224 A 57 57
23 Pakistan 27225 G 57 57
24 Pakistan 27226 G 57 57
25 Pakistan 27227 T 57 57
26 Pakistan 27228 T 57 57
27 Pakistan 27229 A 57 57
28 Pakistan 27230 C 57 57
29 Pakistan 27231 T 57 57
30 Pakistan 27232 A 57 57
31 Pakistan 27233 T 57 57
32 Pakistan 27234 A 57 57
33 Pakistan 27235 G 57 57
34 Pakistan 27236 C 57 57
35 Pakistan 27237 A 57 57
36 Pakistan 27238 G 57 57
37 Pakistan 27239 A 57 57
38 Pakistan 27240 G 57 57
39 Pakistan 27241 A 57 57
40 Pakistan 27242 T 57 57
41 Pakistan 27243 A 57 57
42 Pakistan 27244 T 57 57
43 Pakistan 27245 T 57 57
44 Pakistan 27246 A 57 57
45 Pakistan 27247 C 57 57
46 Pakistan 27248 T 57 57
47 Pakistan 27249 A 57 57
48 Pakistan 27250 A 57 57
49 Pakistan 27251 T 57 57
50 Pakistan 27252 T 57 57
51 Pakistan 27253 A 57 57
52 Pakistan 27254 T 57 57
53 Pakistan 27255 T 57 57
54 Pakistan 27256 A 57 57
55 Pakistan 27257 T 57 57
56 Pakistan 27258 G 57 57
57 Pakistan 27259 A 57 57
58 Pakistan 27260 G 57 57
59 Pakistan 27261 G 57 57
60 Pakistan 27262 A 57 57
61 Pakistan 27263 C 57 57
62 Pakistan 27264 T 57 57
63 Pakistan 27265 T 57 57
64 Pakistan 27266 T 57 57
65 Pakistan 27267 T 57 57
66 Pakistan 27268 A 57 57
67 Pakistan 27269 A 57 57
68 Pakistan 27270 A 57 57
69 Pakistan 27271 G 57 57
70 Pakistan 27272 T 57 57
71 Pakistan 27273 T 57 57
72 Pakistan 27274 T 57 57
73 Pakistan 27275 C 57 57
74 Pakistan 27276 C 57 57
75 Pakistan 27277 A 57 57
76 Pakistan 27278 T 57 57
77 Pakistan 27279 T 57 57
78 Pakistan 27280 T 57 57
79 Pakistan 27281 G 57 57
80 Pakistan 27282 G 57 57
81 Pakistan 27283 A 57 57
82 Pakistan 27284 A 57 57
83 Pakistan 27285 T 57 57
84 Pakistan 27286 C 57 57
85 Pakistan 27287 T 57 57
86 Pakistan 27288 T 57 57
87 Pakistan 27289 G 57 57
88 Pakistan 27290 A 57 57
89 Pakistan 27291 T 57 57
90 Pakistan 27292 T 57 57
91 Pakistan 27293 A 57 57
92 Pakistan 27294 C 57 57
93 Pakistan 27295 A 57 57
94 Pakistan 27296 T 57 57
95 Pakistan 27297 C T 57 55 Ile32Ile
96 Pakistan 27298 A 57 56
97 Pakistan 27299 T 57 56
98 Pakistan 27300 A 57 56
99 Pakistan 27301 A 57 56
100 Pakistan 27302 A 57 57
101 Pakistan 27303 C 57 57
102 Pakistan 27304 C 57 57
103 Pakistan 27305 T 57 57
104 Pakistan 27306 C 57 57
105 Pakistan 27307 A 57 57
106 Pakistan 27308 T 57 57
107 Pakistan 27309 A 57 57
108 Pakistan 27310 A 57 57
109 Pakistan 27311 T 57 57
110 Pakistan 27312 T 57 57
111 Pakistan 27313 A 57 57
112 Pakistan 27314 A 57 57
113 Pakistan 27315 A 57 57
114 Pakistan 27316 A 57 57
115 Pakistan 27317 A 57 57
116 Pakistan 27318 T 57 57
117 Pakistan 27319 T 57 57
118 Pakistan 27320 T 57 57
119 Pakistan 27321 A 57 57
120 Pakistan 27322 T 57 57
121 Pakistan 27323 C 57 57
122 Pakistan 27324 T 57 57
123 Pakistan 27325 A 57 57
124 Pakistan 27326 A 57 57
125 Pakistan 27327 G 57 56
126 Pakistan 27328 T 57 56
127 Pakistan 27329 C 57 56
128 Pakistan 27330 A 57 56
129 Pakistan 27331 C G 57 54 Leu44Val
130 Pakistan 27332 T 57 56
131 Pakistan 27333 A 57 56
132 Pakistan 27334 A 57 56
133 Pakistan 27335 C 57 56
134 Pakistan 27336 T 57 56
135 Pakistan 27337 G 57 56
136 Pakistan 27338 A 57 56
137 Pakistan 27339 G 57 55
138 Pakistan 27340 A 57 55
139 Pakistan 27341 A 57 55
140 Pakistan 27342 T 57 55
141 Pakistan 27343 A 57 56
142 Pakistan 27344 A 57 56
143 Pakistan 27345 A 57 56
144 Pakistan 27346 T 57 56
145 Pakistan 27347 A 57 56
146 Pakistan 27348 T 57 56
147 Pakistan 27349 T 57 56
148 Pakistan 27350 C 57 56
149 Pakistan 27351 T 57 56
150 Pakistan 27352 C 57 56
151 Pakistan 27353 A 57 56
152 Pakistan 27354 A 57 57
153 Pakistan 27355 T 57 57
154 Pakistan 27356 T 57 57
155 Pakistan 27357 A 57 57
156 Pakistan 27358 G 57 57
157 Pakistan 27359 A 57 57
158 Pakistan 27360 T 57 57
159 Pakistan 27361 G 57 57
160 Pakistan 27362 A 57 57
161 Pakistan 27363 A 57 57
162 Pakistan 27364 G 57 57
163 Pakistan 27365 A 57 57
164 Pakistan 27366 G 57 57
165 Pakistan 27367 C 57 57
166 Pakistan 27368 A 57 57
167 Pakistan 27369 A 57 57
168 Pakistan 27370 C 57 57
169 Pakistan 27371 C 57 57
170 Pakistan 27372 A 57 57
171 Pakistan 27373 A 57 57
172 Pakistan 27374 T 57 57
173 Pakistan 27375 G 57 57
174 Pakistan 27376 G 57 57
175 Pakistan 27377 A 57 57
176 Pakistan 27378 G 57 57
177 Pakistan 27379 A 57 57
178 Pakistan 27380 T 57 57
179 Pakistan 27381 T 57 57
180 Pakistan 27382 G 57 57
181 Pakistan 27383 A 57 57
182 Pakistan 27384 T C 57 55 Asp61Asp
183 Pakistan 27385 T 57 57
184 Pakistan 27386 A 57 57
185 Pakistan 27387 A 57 57