National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1                               1
E 1   16   1                           2    
F     9               1                    
H     3                                    
I     30                                    
K     12                   1                
L     24               2                    
M     9           1                        
N     12                                    
P     3               1                    
Q     9                     1              
R     3                           1        
S     12                                    
T     9                                    
V     9 1     1                            
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Norway 27202 A 1277 1277
1 Norway 27203 T 1278 1278
2 Norway 27204 G T 1278 1276 Met1?
3 Norway 27205 T 1278 1278
4 Norway 27206 T 1278 1278
5 Norway 27207 T 1278 1278
6 Norway 27208 C 1278 1278
7 Norway 27209 A 1278 1278
8 Norway 27210 T 1278 1278
9 Norway 27211 C 1278 1278
10 Norway 27212 T 1278 1278
11 Norway 27213 C 1278 1278
12 Norway 27214 G 1278 1278
13 Norway 27215 T 1278 1278
14 Norway 27216 T 1278 1278
15 Norway 27217 G 1278 1278
16 Norway 27218 A 1278 1278
17 Norway 27219 C 1278 1278
18 Norway 27220 T C 1278 1268 Phe7Leu
19 Norway 27221 T 1278 1278
20 Norway 27222 T 1278 1278
21 Norway 27223 C 1278 1278
22 Norway 27224 A C 1278 1277 Gln8Pro
23 Norway 27225 G 1278 1278
24 Norway 27226 G T 1278 1277 Val9Phe
25 Norway 27227 T C 1278 1277 Val9Ala
26 Norway 27228 T 1278 1278
27 Norway 27229 A 1278 1278
28 Norway 27230 C 1278 1278
29 Norway 27231 T 1278 1278
30 Norway 27232 A 1278 1278
31 Norway 27233 T 1278 1278
32 Norway 27234 A 1278 1278
33 Norway 27235 G 1278 1278
34 Norway 27236 C 1278 1278
35 Norway 27237 A 1278 1278
36 Norway 27238 G 1278 1278
37 Norway 27239 A T 1278 1277 Glu13Val
38 Norway 27240 G T 1278 1277 Glu13Asp
39 Norway 27241 A 1278 1278
40 Norway 27242 T 1278 1278
41 Norway 27243 A 1278 1278
42 Norway 27244 T 1278 1278
43 Norway 27245 T 1278 1278
44 Norway 27246 A 1278 1278
45 Norway 27247 C T 1278 1277 Leu16Leu
46 Norway 27248 T 1278 1278
47 Norway 27249 A 1278 1278
48 Norway 27250 A 1278 1278
49 Norway 27251 T 1278 1278
50 Norway 27252 T 1278 1278
51 Norway 27253 A 1278 1278
52 Norway 27254 T 1278 1278
53 Norway 27255 T 1278 1278
54 Norway 27256 A 1278 1278
55 Norway 27257 T 1278 1278
56 Norway 27258 G 1278 1278
57 Norway 27259 A 1278 1278
58 Norway 27260 G 1278 1278
59 Norway 27261 G T 1278 1276 Arg20Ser
60 Norway 27262 A 1278 1278
61 Norway 27263 C 1278 1278
62 Norway 27264 T 1278 1278
63 Norway 27265 T 1278 1278
64 Norway 27266 T 1278 1278
65 Norway 27267 T 1278 1278
66 Norway 27268 A 1278 1278
67 Norway 27269 A 1278 1278
68 Norway 27270 A 1278 1278
69 Norway 27271 G 1278 1278
70 Norway 27272 T 1278 1278
71 Norway 27273 T 1278 1278
72 Norway 27274 T 1278 1278
73 Norway 27275 C 1278 1278
74 Norway 27276 C 1278 1278
75 Norway 27277 A 1278 1278
76 Norway 27278 T 1278 1278
77 Norway 27279 T 1278 1278
78 Norway 27280 T 1278 1278
79 Norway 27281 G 1278 1278
80 Norway 27282 G 1278 1278
81 Norway 27283 A 1278 1278
82 Norway 27284 A 1278 1278
83 Norway 27285 T 1278 1278
84 Norway 27286 C 1278 1278
85 Norway 27287 T 1278 1278
86 Norway 27288 T 1278 1278
87 Norway 27289 G 1278 1278
88 Norway 27290 A 1278 1278
89 Norway 27291 T 1278 1278
90 Norway 27292 T 1278 1278
91 Norway 27293 A 1278 1278
92 Norway 27294 C 1278 1278
93 Norway 27295 A 1278 1278
94 Norway 27296 T 1278 1278
95 Norway 27297 C 1278 1278
96 Norway 27298 A 1278 1278
97 Norway 27299 T 1278 1278
98 Norway 27300 A 1278 1278
99 Norway 27301 A 1278 1278
100 Norway 27302 A 1278 1278
101 Norway 27303 C 1278 1278
102 Norway 27304 C 1278 1278
103 Norway 27305 T 1278 1278
104 Norway 27306 C 1278 1278
105 Norway 27307 A 1278 1278
106 Norway 27308 T 1278 1278
107 Norway 27309 A 1278 1278
108 Norway 27310 A 1278 1278
109 Norway 27311 T 1278 1278
110 Norway 27312 T 1278 1278
111 Norway 27313 A 1278 1278
112 Norway 27314 A 1278 1278
113 Norway 27315 A 1278 1278
114 Norway 27316 A 1278 1278
115 Norway 27317 A 1278 1278
116 Norway 27318 T 1278 1278
117 Norway 27319 T C 1278 1264 Leu40Leu
118 Norway 27320 T 1278 1278
119 Norway 27321 A 1278 1278
120 Norway 27322 T 1278 1278
121 Norway 27323 C 1278 1278
122 Norway 27324 T 1278 1278
123 Norway 27325 A 1278 1278
124 Norway 27326 A 1278 1278
125 Norway 27327 G C 1278 1277 Lys42Asn
126 Norway 27328 T 1278 1278
127 Norway 27329 C 1278 1278
128 Norway 27330 A 1278 1278
129 Norway 27331 C 1278 1278
130 Norway 27332 T 1278 1278
131 Norway 27333 A 1278 1278
132 Norway 27334 A 1278 1278
133 Norway 27335 C 1278 1278
134 Norway 27336 T 1278 1278
135 Norway 27337 G 1278 1278
136 Norway 27338 A 1278 1278
137 Norway 27339 G 1278 1278
138 Norway 27340 A 1278 1278
139 Norway 27341 A 1278 1278
140 Norway 27342 T 1278 1278
141 Norway 27343 A 1278 1278
142 Norway 27344 A 1278 1278
143 Norway 27345 A 1278 1278
144 Norway 27346 T 1278 1278
145 Norway 27347 A 1278 1278
146 Norway 27348 T 1278 1278
147 Norway 27349 T 1278 1278
148 Norway 27350 C 1278 1278
149 Norway 27351 T 1278 1278
150 Norway 27352 C 1278 1278
151 Norway 27353 A 1278 1278
152 Norway 27354 A 1278 1278
153 Norway 27355 T 1278 1278
154 Norway 27356 T 1278 1278
155 Norway 27357 A 1278 1278
156 Norway 27358 G T 1278 1277 Asp53Tyr
157 Norway 27359 A 1278 1278
158 Norway 27360 T 1278 1278
159 Norway 27361 G 1278 1278
160 Norway 27362 A 1278 1278
161 Norway 27363 A 1278 1278
162 Norway 27364 G T 1278 1277 Glu55*
163 Norway 27365 A T 1278 1277 Glu55Val
164 Norway 27366 G 1278 1278
165 Norway 27367 C 1278 1278
166 Norway 27368 A 1278 1278
167 Norway 27369 A 1278 1278
168 Norway 27370 C 1278 1278
169 Norway 27371 C T 1278 1277 Pro57Leu
170 Norway 27372 A 1278 1278
171 Norway 27373 A 1278 1278
172 Norway 27374 T 1278 1278
173 Norway 27375 G 1278 1278
174 Norway 27376 G 1278 1278
175 Norway 27377 A 1278 1278
176 Norway 27378 G 1278 1278
177 Norway 27379 A 1278 1278
178 Norway 27380 T 1278 1278
179 Norway 27381 T 1278 1278
180 Norway 27382 G 1278 1278
181 Norway 27383 A 1278 1278
182 Norway 27384 T C 1278 1277 Asp61Asp
183 Norway 27385 T 1278 1278
184 Norway 27386 A 1278 1278
185 Norway 27387 A 1278 1278