National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 North_Macedonia 27202 A 82 82
1 North_Macedonia 27203 T 82 82
2 North_Macedonia 27204 G 82 82
3 North_Macedonia 27205 T 82 82
4 North_Macedonia 27206 T 82 82
5 North_Macedonia 27207 T 82 82
6 North_Macedonia 27208 C 82 82
7 North_Macedonia 27209 A 82 82
8 North_Macedonia 27210 T 82 82
9 North_Macedonia 27211 C 82 82
10 North_Macedonia 27212 T 82 82
11 North_Macedonia 27213 C 82 82
12 North_Macedonia 27214 G 82 82
13 North_Macedonia 27215 T 82 82
14 North_Macedonia 27216 T 82 82
15 North_Macedonia 27217 G 82 82
16 North_Macedonia 27218 A 82 82
17 North_Macedonia 27219 C 82 82
18 North_Macedonia 27220 T 82 82
19 North_Macedonia 27221 T 82 82
20 North_Macedonia 27222 T 82 82
21 North_Macedonia 27223 C 82 82
22 North_Macedonia 27224 A 82 82
23 North_Macedonia 27225 G 82 82
24 North_Macedonia 27226 G 82 82
25 North_Macedonia 27227 T 82 82
26 North_Macedonia 27228 T 82 82
27 North_Macedonia 27229 A 82 82
28 North_Macedonia 27230 C 82 82
29 North_Macedonia 27231 T 82 82
30 North_Macedonia 27232 A 82 82
31 North_Macedonia 27233 T 82 82
32 North_Macedonia 27234 A 82 82
33 North_Macedonia 27235 G 82 82
34 North_Macedonia 27236 C 82 82
35 North_Macedonia 27237 A 82 82
36 North_Macedonia 27238 G 82 82
37 North_Macedonia 27239 A 82 82
38 North_Macedonia 27240 G 82 82
39 North_Macedonia 27241 A 82 82
40 North_Macedonia 27242 T 82 82
41 North_Macedonia 27243 A 82 82
42 North_Macedonia 27244 T 82 82
43 North_Macedonia 27245 T 82 82
44 North_Macedonia 27246 A 82 82
45 North_Macedonia 27247 C 82 82
46 North_Macedonia 27248 T 82 82
47 North_Macedonia 27249 A 82 82
48 North_Macedonia 27250 A 82 82
49 North_Macedonia 27251 T 82 82
50 North_Macedonia 27252 T 82 82
51 North_Macedonia 27253 A 82 82
52 North_Macedonia 27254 T 82 82
53 North_Macedonia 27255 T 82 82
54 North_Macedonia 27256 A 82 82
55 North_Macedonia 27257 T 82 82
56 North_Macedonia 27258 G 82 82
57 North_Macedonia 27259 A 82 82
58 North_Macedonia 27260 G 82 82
59 North_Macedonia 27261 G 82 82
60 North_Macedonia 27262 A 82 82
61 North_Macedonia 27263 C 82 82
62 North_Macedonia 27264 T 82 82
63 North_Macedonia 27265 T 82 82
64 North_Macedonia 27266 T 82 82
65 North_Macedonia 27267 T 82 82
66 North_Macedonia 27268 A 82 82
67 North_Macedonia 27269 A 82 82
68 North_Macedonia 27270 A 82 82
69 North_Macedonia 27271 G 82 82
70 North_Macedonia 27272 T 82 82
71 North_Macedonia 27273 T 82 82
72 North_Macedonia 27274 T 82 82
73 North_Macedonia 27275 C 82 82
74 North_Macedonia 27276 C 82 82
75 North_Macedonia 27277 A 82 82
76 North_Macedonia 27278 T 82 82
77 North_Macedonia 27279 T 82 82
78 North_Macedonia 27280 T 82 82
79 North_Macedonia 27281 G 82 82
80 North_Macedonia 27282 G 82 82
81 North_Macedonia 27283 A 82 82
82 North_Macedonia 27284 A 82 82
83 North_Macedonia 27285 T 82 82
84 North_Macedonia 27286 C 82 82
85 North_Macedonia 27287 T 82 82
86 North_Macedonia 27288 T 82 82
87 North_Macedonia 27289 G 82 82
88 North_Macedonia 27290 A 82 82
89 North_Macedonia 27291 T 82 82
90 North_Macedonia 27292 T 82 82
91 North_Macedonia 27293 A 82 82
92 North_Macedonia 27294 C 82 82
93 North_Macedonia 27295 A 82 82
94 North_Macedonia 27296 T 82 82
95 North_Macedonia 27297 C 82 82
96 North_Macedonia 27298 A 82 82
97 North_Macedonia 27299 T 82 82
98 North_Macedonia 27300 A 82 82
99 North_Macedonia 27301 A 82 82
100 North_Macedonia 27302 A 82 82
101 North_Macedonia 27303 C 82 82
102 North_Macedonia 27304 C 82 82
103 North_Macedonia 27305 T 82 82
104 North_Macedonia 27306 C 82 82
105 North_Macedonia 27307 A 82 82
106 North_Macedonia 27308 T 82 82
107 North_Macedonia 27309 A 82 82
108 North_Macedonia 27310 A 82 82
109 North_Macedonia 27311 T 82 82
110 North_Macedonia 27312 T 82 82
111 North_Macedonia 27313 A 82 82
112 North_Macedonia 27314 A 82 82
113 North_Macedonia 27315 A 82 82
114 North_Macedonia 27316 A 82 82
115 North_Macedonia 27317 A 82 82
116 North_Macedonia 27318 T 82 82
117 North_Macedonia 27319 T 82 82
118 North_Macedonia 27320 T 82 82
119 North_Macedonia 27321 A 82 82
120 North_Macedonia 27322 T 82 82
121 North_Macedonia 27323 C 82 82
122 North_Macedonia 27324 T 82 82
123 North_Macedonia 27325 A 82 82
124 North_Macedonia 27326 A 82 82
125 North_Macedonia 27327 G 82 82
126 North_Macedonia 27328 T 82 82
127 North_Macedonia 27329 C 82 82
128 North_Macedonia 27330 A 82 82
129 North_Macedonia 27331 C 82 82
130 North_Macedonia 27332 T 82 82
131 North_Macedonia 27333 A 82 82
132 North_Macedonia 27334 A 82 82
133 North_Macedonia 27335 C 82 82
134 North_Macedonia 27336 T 82 82
135 North_Macedonia 27337 G 82 82
136 North_Macedonia 27338 A 82 82
137 North_Macedonia 27339 G 82 82
138 North_Macedonia 27340 A 82 82
139 North_Macedonia 27341 A 82 82
140 North_Macedonia 27342 T 82 82
141 North_Macedonia 27343 A 82 82
142 North_Macedonia 27344 A 82 82
143 North_Macedonia 27345 A 82 82
144 North_Macedonia 27346 T 82 82
145 North_Macedonia 27347 A 82 82
146 North_Macedonia 27348 T 82 82
147 North_Macedonia 27349 T 82 82
148 North_Macedonia 27350 C 82 82
149 North_Macedonia 27351 T 82 82
150 North_Macedonia 27352 C 82 82
151 North_Macedonia 27353 A 82 82
152 North_Macedonia 27354 A 82 82
153 North_Macedonia 27355 T 82 82
154 North_Macedonia 27356 T 82 82
155 North_Macedonia 27357 A 82 82
156 North_Macedonia 27358 G 82 82
157 North_Macedonia 27359 A 82 82
158 North_Macedonia 27360 T 82 82
159 North_Macedonia 27361 G 82 82
160 North_Macedonia 27362 A 82 82
161 North_Macedonia 27363 A 82 82
162 North_Macedonia 27364 G 82 82
163 North_Macedonia 27365 A 82 82
164 North_Macedonia 27366 G 82 82
165 North_Macedonia 27367 C 82 82
166 North_Macedonia 27368 A 82 82
167 North_Macedonia 27369 A 82 82
168 North_Macedonia 27370 C 82 82
169 North_Macedonia 27371 C 82 82
170 North_Macedonia 27372 A 82 82
171 North_Macedonia 27373 A 82 82
172 North_Macedonia 27374 T 82 82
173 North_Macedonia 27375 G 82 82
174 North_Macedonia 27376 G 82 82
175 North_Macedonia 27377 A 82 82
176 North_Macedonia 27378 G 82 82
177 North_Macedonia 27379 A 82 82
178 North_Macedonia 27380 T 82 82
179 North_Macedonia 27381 T 82 82
180 North_Macedonia 27382 G 82 82
181 North_Macedonia 27383 A 82 82
182 North_Macedonia 27384 T 82 82
183 North_Macedonia 27385 T 82 82
184 North_Macedonia 27386 A 82 82
185 North_Macedonia 27387 A 82 82