National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                             2      
K     12                                    
L     24               3                    
M     9                                    
N     12                                    
P     3                                    
Q     9               1       1            
R     3                           1        
S     12                                    
T     9                                    
V     9       1                            
W     3               1                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 New_Zealand 27202 A 1105 1105
1 New_Zealand 27203 T 1105 1105
2 New_Zealand 27204 G 1105 1105
3 New_Zealand 27205 T 1105 1105
4 New_Zealand 27206 T 1105 1105
5 New_Zealand 27207 T 1105 1105
6 New_Zealand 27208 C 1105 1105
7 New_Zealand 27209 A 1105 1105
8 New_Zealand 27210 T 1105 1105
9 New_Zealand 27211 C 1105 1105
10 New_Zealand 27212 T 1105 1105
11 New_Zealand 27213 C T 1105 1104 Leu4Leu
12 New_Zealand 27214 G 1105 1105
13 New_Zealand 27215 T 1105 1105
14 New_Zealand 27216 T 1105 1105
15 New_Zealand 27217 G 1105 1105
16 New_Zealand 27218 A 1105 1105
17 New_Zealand 27219 C 1105 1105
18 New_Zealand 27220 T 1105 1105
19 New_Zealand 27221 T 1105 1105
20 New_Zealand 27222 T 1105 1105
21 New_Zealand 27223 C 1105 1105
22 New_Zealand 27224 A 1105 1105
23 New_Zealand 27225 G 1105 1105
24 New_Zealand 27226 G 1105 1105
25 New_Zealand 27227 T 1105 1105
26 New_Zealand 27228 T 1105 1105
27 New_Zealand 27229 A 1105 1105
28 New_Zealand 27230 C 1105 1105
29 New_Zealand 27231 T 1105 1105
30 New_Zealand 27232 A 1105 1105
31 New_Zealand 27233 T C 1105 1104 Ile11Thr
32 New_Zealand 27234 A 1105 1105
33 New_Zealand 27235 G 1105 1105
34 New_Zealand 27236 C 1105 1105
35 New_Zealand 27237 A 1105 1105
36 New_Zealand 27238 G 1105 1105
37 New_Zealand 27239 A 1105 1105
38 New_Zealand 27240 G 1105 1105
39 New_Zealand 27241 A 1105 1105
40 New_Zealand 27242 T 1105 1105
41 New_Zealand 27243 A 1105 1105
42 New_Zealand 27244 T 1105 1105
43 New_Zealand 27245 T 1105 1105
44 New_Zealand 27246 A 1105 1105
45 New_Zealand 27247 C T 1105 1103 Leu16Leu
46 New_Zealand 27248 T 1105 1105
47 New_Zealand 27249 A 1105 1105
48 New_Zealand 27250 A 1105 1105
49 New_Zealand 27251 T 1105 1105
50 New_Zealand 27252 T 1105 1105
51 New_Zealand 27253 A 1105 1105
52 New_Zealand 27254 T 1105 1105
53 New_Zealand 27255 T 1105 1105
54 New_Zealand 27256 A 1105 1105
55 New_Zealand 27257 T 1105 1105
56 New_Zealand 27258 G 1105 1105
57 New_Zealand 27259 A 1105 1105
58 New_Zealand 27260 G 1105 1105
59 New_Zealand 27261 G T 1105 1103 Arg20Ser
60 New_Zealand 27262 A 1105 1105
61 New_Zealand 27263 C 1105 1105
62 New_Zealand 27264 T 1105 1105
63 New_Zealand 27265 T 1105 1105
64 New_Zealand 27266 T 1105 1105
65 New_Zealand 27267 T 1105 1105
66 New_Zealand 27268 A 1105 1105
67 New_Zealand 27269 A 1105 1105
68 New_Zealand 27270 A 1105 1105
69 New_Zealand 27271 G T 1105 1104 Val24Phe
70 New_Zealand 27272 T 1105 1105
71 New_Zealand 27273 T 1105 1105
72 New_Zealand 27274 T 1105 1105
73 New_Zealand 27275 C 1105 1105
74 New_Zealand 27276 C 1105 1105
75 New_Zealand 27277 A 1105 1105
76 New_Zealand 27278 T 1105 1105
77 New_Zealand 27279 T 1105 1105
78 New_Zealand 27280 T 1105 1105
79 New_Zealand 27281 G T 1105 1102 Trp27Leu
80 New_Zealand 27282 G 1105 1105
81 New_Zealand 27283 A 1105 1105
82 New_Zealand 27284 A 1105 1105
83 New_Zealand 27285 T 1105 1105
84 New_Zealand 27286 C 1105 1105
85 New_Zealand 27287 T 1105 1105
86 New_Zealand 27288 T 1105 1105
87 New_Zealand 27289 G 1105 1105
88 New_Zealand 27290 A 1105 1105
89 New_Zealand 27291 T 1105 1105
90 New_Zealand 27292 T 1105 1105
91 New_Zealand 27293 A 1105 1105
92 New_Zealand 27294 C 1105 1105
93 New_Zealand 27295 A 1105 1105
94 New_Zealand 27296 T 1105 1105
95 New_Zealand 27297 C 1105 1104
96 New_Zealand 27298 A 1105 1105
97 New_Zealand 27299 T C 1105 1100 Ile33Thr
98 New_Zealand 27300 A 1105 1105
99 New_Zealand 27301 A 1105 1105
100 New_Zealand 27302 A 1105 1105
101 New_Zealand 27303 C 1105 1105
102 New_Zealand 27304 C 1105 1105
103 New_Zealand 27305 T 1105 1105
104 New_Zealand 27306 C 1105 1105
105 New_Zealand 27307 A 1105 1105
106 New_Zealand 27308 T 1105 1105
107 New_Zealand 27309 A 1105 1105
108 New_Zealand 27310 A 1105 1105
109 New_Zealand 27311 T 1105 1105
110 New_Zealand 27312 T 1105 1105
111 New_Zealand 27313 A 1105 1105
112 New_Zealand 27314 A 1105 1105
113 New_Zealand 27315 A 1105 1105
114 New_Zealand 27316 A 1105 1105
115 New_Zealand 27317 A 1105 1105
116 New_Zealand 27318 T 1105 1105
117 New_Zealand 27319 T C 1105 1104 Leu40Leu
118 New_Zealand 27320 T 1105 1105
119 New_Zealand 27321 A 1105 1105
120 New_Zealand 27322 T 1105 1105
121 New_Zealand 27323 C 1105 1105
122 New_Zealand 27324 T 1105 1105
123 New_Zealand 27325 A 1105 1105
124 New_Zealand 27326 A 1105 1105
125 New_Zealand 27327 G 1105 1105
126 New_Zealand 27328 T 1105 1105
127 New_Zealand 27329 C 1105 1105
128 New_Zealand 27330 A 1105 1105
129 New_Zealand 27331 C 1105 1105
130 New_Zealand 27332 T 1105 1105
131 New_Zealand 27333 A 1105 1105
132 New_Zealand 27334 A 1105 1105
133 New_Zealand 27335 C 1105 1105
134 New_Zealand 27336 T 1105 1105
135 New_Zealand 27337 G 1105 1105
136 New_Zealand 27338 A 1105 1105
137 New_Zealand 27339 G 1105 1105
138 New_Zealand 27340 A 1105 1105
139 New_Zealand 27341 A 1105 1105
140 New_Zealand 27342 T 1105 1105
141 New_Zealand 27343 A 1105 1105
142 New_Zealand 27344 A 1105 1105
143 New_Zealand 27345 A 1105 1105
144 New_Zealand 27346 T 1105 1105
145 New_Zealand 27347 A 1105 1105
146 New_Zealand 27348 T 1105 1105
147 New_Zealand 27349 T 1105 1105
148 New_Zealand 27350 C 1105 1105
149 New_Zealand 27351 T 1105 1105
150 New_Zealand 27352 C 1105 1105
151 New_Zealand 27353 A T 1105 1104 Gln51Leu
152 New_Zealand 27354 A G 1105 1104 Gln51Gln
153 New_Zealand 27355 T 1105 1105
154 New_Zealand 27356 T 1105 1105
155 New_Zealand 27357 A 1105 1105
156 New_Zealand 27358 G 1105 1105
157 New_Zealand 27359 A 1105 1105
158 New_Zealand 27360 T 1105 1105
159 New_Zealand 27361 G 1105 1105
160 New_Zealand 27362 A 1105 1105
161 New_Zealand 27363 A 1105 1105
162 New_Zealand 27364 G 1105 1105
163 New_Zealand 27365 A 1105 1105
164 New_Zealand 27366 G 1105 1105
165 New_Zealand 27367 C 1105 1105
166 New_Zealand 27368 A 1105 1105
167 New_Zealand 27369 A 1105 1105
168 New_Zealand 27370 C 1105 1105
169 New_Zealand 27371 C 1105 1105
170 New_Zealand 27372 A 1105 1105
171 New_Zealand 27373 A 1105 1105
172 New_Zealand 27374 T 1105 1105
173 New_Zealand 27375 G 1105 1105
174 New_Zealand 27376 G 1105 1105
175 New_Zealand 27377 A 1105 1105
176 New_Zealand 27378 G 1097 1094
177 New_Zealand 27379 A 1097 1094
178 New_Zealand 27380 T 1097 1097
179 New_Zealand 27381 T 1097 1097
180 New_Zealand 27382 G 1097 1097
181 New_Zealand 27383 A 1097 1097
182 New_Zealand 27384 T 1097 1097
183 New_Zealand 27385 T 1097 1097
184 New_Zealand 27386 A 1097 1097
185 New_Zealand 27387 A 1097 1097