National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F G H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
D     12   1                                  
E     16         1                            
F     9                                      
G                                            
H     3                                      
I     30                                      
K     12                                      
L     24                                      
M     9                                      
N     12                                      
P     3                                      
Q     9                                      
R     3                                      
S     12                                      
T     9                                      
V     9                                      
W     3                                      
Y     6                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Myanmar 27202 A 41 41
1 Myanmar 27203 T 41 41
2 Myanmar 27204 G 41 41
3 Myanmar 27205 T 41 41
4 Myanmar 27206 T 41 41
5 Myanmar 27207 T 41 41
6 Myanmar 27208 C 41 41
7 Myanmar 27209 A 41 41
8 Myanmar 27210 T 41 41
9 Myanmar 27211 C 41 41
10 Myanmar 27212 T 41 41
11 Myanmar 27213 C 41 41
12 Myanmar 27214 G 41 41
13 Myanmar 27215 T 41 41
14 Myanmar 27216 T 41 41
15 Myanmar 27217 G 41 41
16 Myanmar 27218 A 41 41
17 Myanmar 27219 C 41 41
18 Myanmar 27220 T 41 41
19 Myanmar 27221 T 41 41
20 Myanmar 27222 T 41 41
21 Myanmar 27223 C 41 41
22 Myanmar 27224 A 41 41
23 Myanmar 27225 G 41 41
24 Myanmar 27226 G 41 41
25 Myanmar 27227 T 41 41
26 Myanmar 27228 T 41 41
27 Myanmar 27229 A 41 41
28 Myanmar 27230 C 41 41
29 Myanmar 27231 T 41 41
30 Myanmar 27232 A 41 41
31 Myanmar 27233 T 41 41
32 Myanmar 27234 A 41 41
33 Myanmar 27235 G 41 41
34 Myanmar 27236 C 41 41
35 Myanmar 27237 A 41 41
36 Myanmar 27238 G 41 41
37 Myanmar 27239 A 41 41
38 Myanmar 27240 G 41 41
39 Myanmar 27241 A 41 41
40 Myanmar 27242 T 41 41
41 Myanmar 27243 A 41 41
42 Myanmar 27244 T 41 41
43 Myanmar 27245 T 41 41
44 Myanmar 27246 A 41 41
45 Myanmar 27247 C 41 41
46 Myanmar 27248 T 41 41
47 Myanmar 27249 A 41 41
48 Myanmar 27250 A 41 41
49 Myanmar 27251 T 41 41
50 Myanmar 27252 T 41 41
51 Myanmar 27253 A 41 41
52 Myanmar 27254 T 41 41
53 Myanmar 27255 T 41 41
54 Myanmar 27256 A 41 41
55 Myanmar 27257 T 41 41
56 Myanmar 27258 G 41 41
57 Myanmar 27259 A 41 41
58 Myanmar 27260 G 41 41
59 Myanmar 27261 G 41 41
60 Myanmar 27262 A 41 41
61 Myanmar 27263 C 41 41
62 Myanmar 27264 T 41 41
63 Myanmar 27265 T 41 41
64 Myanmar 27266 T 41 41
65 Myanmar 27267 T 41 41
66 Myanmar 27268 A 41 41
67 Myanmar 27269 A 41 41
68 Myanmar 27270 A 41 41
69 Myanmar 27271 G 41 41
70 Myanmar 27272 T 41 41
71 Myanmar 27273 T 41 41
72 Myanmar 27274 T 41 41
73 Myanmar 27275 C 41 41
74 Myanmar 27276 C 41 41
75 Myanmar 27277 A 41 41
76 Myanmar 27278 T 41 41
77 Myanmar 27279 T 41 41
78 Myanmar 27280 T 41 41
79 Myanmar 27281 G 41 41
80 Myanmar 27282 G 41 41
81 Myanmar 27283 A 41 41
82 Myanmar 27284 A 41 41
83 Myanmar 27285 T 41 41
84 Myanmar 27286 C 41 41
85 Myanmar 27287 T 41 41
86 Myanmar 27288 T 41 41
87 Myanmar 27289 G 41 41
88 Myanmar 27290 A 41 41
89 Myanmar 27291 T 41 41
90 Myanmar 27292 T 41 41
91 Myanmar 27293 A 41 41
92 Myanmar 27294 C 41 41
93 Myanmar 27295 A 41 41
94 Myanmar 27296 T 41 41
95 Myanmar 27297 C 41 41
96 Myanmar 27298 A 41 41
97 Myanmar 27299 T 41 41
98 Myanmar 27300 A 41 41
99 Myanmar 27301 A 41 41
100 Myanmar 27302 A 41 41
101 Myanmar 27303 C 41 41
102 Myanmar 27304 C 41 41
103 Myanmar 27305 T 41 41
104 Myanmar 27306 C 41 41
105 Myanmar 27307 A 41 41
106 Myanmar 27308 T 41 41
107 Myanmar 27309 A 41 41
108 Myanmar 27310 A 41 41
109 Myanmar 27311 T 41 41
110 Myanmar 27312 T 41 41
111 Myanmar 27313 A 41 41
112 Myanmar 27314 A 41 41
113 Myanmar 27315 A 41 41
114 Myanmar 27316 A 41 41
115 Myanmar 27317 A 41 41
116 Myanmar 27318 T 41 41
117 Myanmar 27319 T 41 41
118 Myanmar 27320 T 41 41
119 Myanmar 27321 A 41 41
120 Myanmar 27322 T 41 41
121 Myanmar 27323 C 41 41
122 Myanmar 27324 T 41 41
123 Myanmar 27325 A 41 41
124 Myanmar 27326 A 41 41
125 Myanmar 27327 G 41 41
126 Myanmar 27328 T 41 41
127 Myanmar 27329 C 41 41
128 Myanmar 27330 A 41 41
129 Myanmar 27331 C 41 41
130 Myanmar 27332 T 41 41
131 Myanmar 27333 A 41 41
132 Myanmar 27334 A 41 41
133 Myanmar 27335 C 41 41
134 Myanmar 27336 T 41 41
135 Myanmar 27337 G 41 41
136 Myanmar 27338 A G 41 40 Glu46Gly
137 Myanmar 27339 G 41 41
138 Myanmar 27340 A 41 41
139 Myanmar 27341 A 41 41
140 Myanmar 27342 T 41 41
141 Myanmar 27343 A 41 41
142 Myanmar 27344 A 41 41
143 Myanmar 27345 A 41 41
144 Myanmar 27346 T 41 41
145 Myanmar 27347 A 41 41
146 Myanmar 27348 T 41 41
147 Myanmar 27349 T 41 41
148 Myanmar 27350 C 41 41
149 Myanmar 27351 T 41 41
150 Myanmar 27352 C 41 41
151 Myanmar 27353 A 41 41
152 Myanmar 27354 A 41 41
153 Myanmar 27355 T 41 41
154 Myanmar 27356 T 41 41
155 Myanmar 27357 A 41 41
156 Myanmar 27358 G 41 41
157 Myanmar 27359 A 41 41
158 Myanmar 27360 T 41 41
159 Myanmar 27361 G 41 41
160 Myanmar 27362 A 41 41
161 Myanmar 27363 A 41 41
162 Myanmar 27364 G 41 41
163 Myanmar 27365 A 41 41
164 Myanmar 27366 G 41 41
165 Myanmar 27367 C 41 41
166 Myanmar 27368 A 41 41
167 Myanmar 27369 A 41 41
168 Myanmar 27370 C 41 41
169 Myanmar 27371 C 41 41
170 Myanmar 27372 A 41 41
171 Myanmar 27373 A 41 41
172 Myanmar 27374 T 41 41
173 Myanmar 27375 G 41 41
174 Myanmar 27376 G 41 41
175 Myanmar 27377 A 41 41
176 Myanmar 27378 G 41 41
177 Myanmar 27379 A 41 41
178 Myanmar 27380 T 41 41
179 Myanmar 27381 T 41 41
180 Myanmar 27382 G 41 41
181 Myanmar 27383 A 41 41
182 Myanmar 27384 T C 41 40 Asp61Asp
183 Myanmar 27385 T 41 41
184 Myanmar 27386 A 41 41
185 Myanmar 27387 A 41 41