National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                               1    
E     16                                    
F     9       1                            
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9           1                        
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mozambique 27202 A 94 94
1 Mozambique 27203 T 94 94
2 Mozambique 27204 G 94 94
3 Mozambique 27205 T 94 94
4 Mozambique 27206 T 94 94
5 Mozambique 27207 T C 94 93 Phe2Phe
6 Mozambique 27208 C 94 94
7 Mozambique 27209 A 94 94
8 Mozambique 27210 T 94 94
9 Mozambique 27211 C 94 94
10 Mozambique 27212 T 94 94
11 Mozambique 27213 C 94 94
12 Mozambique 27214 G 94 94
13 Mozambique 27215 T 94 94
14 Mozambique 27216 T 94 94
15 Mozambique 27217 G 94 94
16 Mozambique 27218 A 94 94
17 Mozambique 27219 C 94 94
18 Mozambique 27220 T 94 94
19 Mozambique 27221 T 94 94
20 Mozambique 27222 T 94 94
21 Mozambique 27223 C 94 94
22 Mozambique 27224 A 94 94
23 Mozambique 27225 G 94 94
24 Mozambique 27226 G 94 94
25 Mozambique 27227 T 94 94
26 Mozambique 27228 T 94 94
27 Mozambique 27229 A 94 94
28 Mozambique 27230 C 94 94
29 Mozambique 27231 T 94 94
30 Mozambique 27232 A 94 94
31 Mozambique 27233 T 94 94
32 Mozambique 27234 A 94 94
33 Mozambique 27235 G 94 94
34 Mozambique 27236 C 94 94
35 Mozambique 27237 A 94 94
36 Mozambique 27238 G 94 94
37 Mozambique 27239 A 94 94
38 Mozambique 27240 G 94 94
39 Mozambique 27241 A 94 94
40 Mozambique 27242 T 94 94
41 Mozambique 27243 A 94 94
42 Mozambique 27244 T 94 94
43 Mozambique 27245 T 94 94
44 Mozambique 27246 A 94 94
45 Mozambique 27247 C 94 94
46 Mozambique 27248 T 94 94
47 Mozambique 27249 A 94 94
48 Mozambique 27250 A 94 94
49 Mozambique 27251 T 94 94
50 Mozambique 27252 T 94 94
51 Mozambique 27253 A 94 94
52 Mozambique 27254 T 94 94
53 Mozambique 27255 T 94 94
54 Mozambique 27256 A 94 94
55 Mozambique 27257 T 94 94
56 Mozambique 27258 G 94 94
57 Mozambique 27259 A 94 94
58 Mozambique 27260 G 94 94
59 Mozambique 27261 G 94 94
60 Mozambique 27262 A 94 94
61 Mozambique 27263 C 94 94
62 Mozambique 27264 T 94 94
63 Mozambique 27265 T 94 94
64 Mozambique 27266 T 94 94
65 Mozambique 27267 T 94 94
66 Mozambique 27268 A 94 94
67 Mozambique 27269 A 94 94
68 Mozambique 27270 A 94 94
69 Mozambique 27271 G 94 94
70 Mozambique 27272 T 94 94
71 Mozambique 27273 T 94 94
72 Mozambique 27274 T 94 94
73 Mozambique 27275 C 94 94
74 Mozambique 27276 C 94 94
75 Mozambique 27277 A 94 94
76 Mozambique 27278 T 94 94
77 Mozambique 27279 T 94 94
78 Mozambique 27280 T 94 94
79 Mozambique 27281 G 94 94
80 Mozambique 27282 G 94 94
81 Mozambique 27283 A 94 94
82 Mozambique 27284 A 94 94
83 Mozambique 27285 T 94 94
84 Mozambique 27286 C 94 94
85 Mozambique 27287 T 94 94
86 Mozambique 27288 T 94 94
87 Mozambique 27289 G 94 94
88 Mozambique 27290 A 94 94
89 Mozambique 27291 T 94 94
90 Mozambique 27292 T 94 94
91 Mozambique 27293 A 94 94
92 Mozambique 27294 C 94 94
93 Mozambique 27295 A 94 94
94 Mozambique 27296 T 94 94
95 Mozambique 27297 C 94 94
96 Mozambique 27298 A 94 94
97 Mozambique 27299 T 94 94
98 Mozambique 27300 A 94 94
99 Mozambique 27301 A 94 94
100 Mozambique 27302 A 94 94
101 Mozambique 27303 C 94 94
102 Mozambique 27304 C 94 94
103 Mozambique 27305 T 94 94
104 Mozambique 27306 C 94 94
105 Mozambique 27307 A 94 94
106 Mozambique 27308 T 94 94
107 Mozambique 27309 A 94 94
108 Mozambique 27310 A 94 94
109 Mozambique 27311 T 94 94
110 Mozambique 27312 T 94 94
111 Mozambique 27313 A 94 94
112 Mozambique 27314 A 94 94
113 Mozambique 27315 A 94 94
114 Mozambique 27316 A 94 94
115 Mozambique 27317 A 94 94
116 Mozambique 27318 T 94 94
117 Mozambique 27319 T 94 94
118 Mozambique 27320 T 94 94
119 Mozambique 27321 A 94 94
120 Mozambique 27322 T 94 94
121 Mozambique 27323 C 94 94
122 Mozambique 27324 T 94 94
123 Mozambique 27325 A 94 94
124 Mozambique 27326 A 94 94
125 Mozambique 27327 G 94 94
126 Mozambique 27328 T 94 94
127 Mozambique 27329 C 94 94
128 Mozambique 27330 A 94 94
129 Mozambique 27331 C 94 94
130 Mozambique 27332 T 94 94
131 Mozambique 27333 A 94 94
132 Mozambique 27334 A 94 94
133 Mozambique 27335 C 94 94
134 Mozambique 27336 T 94 94
135 Mozambique 27337 G 94 94
136 Mozambique 27338 A 94 94
137 Mozambique 27339 G 94 94
138 Mozambique 27340 A 94 94
139 Mozambique 27341 A 94 94
140 Mozambique 27342 T 94 94
141 Mozambique 27343 A 94 94
142 Mozambique 27344 A 94 94
143 Mozambique 27345 A 94 94
144 Mozambique 27346 T 94 94
145 Mozambique 27347 A 94 94
146 Mozambique 27348 T 94 94
147 Mozambique 27349 T 94 94
148 Mozambique 27350 C 94 94
149 Mozambique 27351 T 94 94
150 Mozambique 27352 C 94 94
151 Mozambique 27353 A 94 94
152 Mozambique 27354 A 94 94
153 Mozambique 27355 T 94 94
154 Mozambique 27356 T 94 94
155 Mozambique 27357 A 94 94
156 Mozambique 27358 G 94 94
157 Mozambique 27359 A T 94 93 Asp53Val
158 Mozambique 27360 T 94 94
159 Mozambique 27361 G 94 94
160 Mozambique 27362 A 94 94
161 Mozambique 27363 A 94 94
162 Mozambique 27364 G 94 94
163 Mozambique 27365 A 94 94
164 Mozambique 27366 G 94 94
165 Mozambique 27367 C 94 94
166 Mozambique 27368 A 94 94
167 Mozambique 27369 A 94 94
168 Mozambique 27370 C 94 94
169 Mozambique 27371 C 94 94
170 Mozambique 27372 A 94 94
171 Mozambique 27373 A 94 94
172 Mozambique 27374 T 94 94
173 Mozambique 27375 G T 94 93 Met58Ile
174 Mozambique 27376 G 94 94
175 Mozambique 27377 A 94 94
176 Mozambique 27378 G 94 94
177 Mozambique 27379 A 94 94
178 Mozambique 27380 T 94 94
179 Mozambique 27381 T 94 94
180 Mozambique 27382 G 94 94
181 Mozambique 27383 A 94 94
182 Mozambique 27384 T 94 94
183 Mozambique 27385 T 94 94
184 Mozambique 27386 A 94 94
185 Mozambique 27387 A 94 94