National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24               2                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 27202 A 121 121
1 Morocco 27203 T 121 121
2 Morocco 27204 G 121 121
3 Morocco 27205 T 121 121
4 Morocco 27206 T 121 121
5 Morocco 27207 T 121 121
6 Morocco 27208 C 121 121
7 Morocco 27209 A 121 121
8 Morocco 27210 T 121 121
9 Morocco 27211 C 121 121
10 Morocco 27212 T 121 121
11 Morocco 27213 C T 121 120 Leu4Leu
12 Morocco 27214 G 121 121
13 Morocco 27215 T 121 121
14 Morocco 27216 T 121 121
15 Morocco 27217 G 121 121
16 Morocco 27218 A 121 121
17 Morocco 27219 C 121 121
18 Morocco 27220 T 121 121
19 Morocco 27221 T 121 121
20 Morocco 27222 T 121 121
21 Morocco 27223 C 121 121
22 Morocco 27224 A 121 121
23 Morocco 27225 G 121 121
24 Morocco 27226 G 121 121
25 Morocco 27227 T 121 121
26 Morocco 27228 T 121 121
27 Morocco 27229 A 121 121
28 Morocco 27230 C 121 121
29 Morocco 27231 T 121 121
30 Morocco 27232 A 121 121
31 Morocco 27233 T 121 121
32 Morocco 27234 A 121 121
33 Morocco 27235 G 121 121
34 Morocco 27236 C 121 121
35 Morocco 27237 A 121 121
36 Morocco 27238 G 121 121
37 Morocco 27239 A 121 121
38 Morocco 27240 G 121 121
39 Morocco 27241 A 121 121
40 Morocco 27242 T 121 121
41 Morocco 27243 A 121 121
42 Morocco 27244 T 121 121
43 Morocco 27245 T 121 121
44 Morocco 27246 A 121 121
45 Morocco 27247 C T 121 118 Leu16Leu
46 Morocco 27248 T 121 121
47 Morocco 27249 A 121 121
48 Morocco 27250 A 121 121
49 Morocco 27251 T 121 121
50 Morocco 27252 T 121 121
51 Morocco 27253 A 121 121
52 Morocco 27254 T 121 121
53 Morocco 27255 T 121 121
54 Morocco 27256 A 121 121
55 Morocco 27257 T 121 121
56 Morocco 27258 G 121 121
57 Morocco 27259 A 121 121
58 Morocco 27260 G 121 121
59 Morocco 27261 G 121 121
60 Morocco 27262 A 121 121
61 Morocco 27263 C 121 121
62 Morocco 27264 T 121 121
63 Morocco 27265 T 121 121
64 Morocco 27266 T 121 121
65 Morocco 27267 T 121 121
66 Morocco 27268 A 121 121
67 Morocco 27269 A 121 121
68 Morocco 27270 A 121 121
69 Morocco 27271 G 121 121
70 Morocco 27272 T 121 121
71 Morocco 27273 T 121 121
72 Morocco 27274 T 121 121
73 Morocco 27275 C 121 121
74 Morocco 27276 C 121 121
75 Morocco 27277 A 121 121
76 Morocco 27278 T 121 121
77 Morocco 27279 T 121 121
78 Morocco 27280 T 121 121
79 Morocco 27281 G 121 121
80 Morocco 27282 G 121 121
81 Morocco 27283 A 121 121
82 Morocco 27284 A 121 121
83 Morocco 27285 T 121 121
84 Morocco 27286 C 121 121
85 Morocco 27287 T 121 121
86 Morocco 27288 T 121 121
87 Morocco 27289 G 121 121
88 Morocco 27290 A 121 121
89 Morocco 27291 T 121 121
90 Morocco 27292 T 121 121
91 Morocco 27293 A 121 121
92 Morocco 27294 C 121 121
93 Morocco 27295 A 121 121
94 Morocco 27296 T 121 121
95 Morocco 27297 C 121 121
96 Morocco 27298 A 121 121
97 Morocco 27299 T 121 121
98 Morocco 27300 A 121 121
99 Morocco 27301 A 121 121
100 Morocco 27302 A 121 121
101 Morocco 27303 C 121 121
102 Morocco 27304 C 121 121
103 Morocco 27305 T 121 121
104 Morocco 27306 C 121 121
105 Morocco 27307 A 121 121
106 Morocco 27308 T 121 121
107 Morocco 27309 A 121 121
108 Morocco 27310 A 121 121
109 Morocco 27311 T 121 121
110 Morocco 27312 T 121 121
111 Morocco 27313 A 121 121
112 Morocco 27314 A 121 121
113 Morocco 27315 A 121 121
114 Morocco 27316 A 121 121
115 Morocco 27317 A 121 121
116 Morocco 27318 T 121 121
117 Morocco 27319 T 121 121
118 Morocco 27320 T 121 121
119 Morocco 27321 A 121 121
120 Morocco 27322 T 121 121
121 Morocco 27323 C 121 121
122 Morocco 27324 T 121 121
123 Morocco 27325 A 121 121
124 Morocco 27326 A 121 121
125 Morocco 27327 G 121 121
126 Morocco 27328 T 121 121
127 Morocco 27329 C 121 121
128 Morocco 27330 A 121 121
129 Morocco 27331 C 121 121
130 Morocco 27332 T 121 121
131 Morocco 27333 A 121 121
132 Morocco 27334 A 121 121
133 Morocco 27335 C 121 121
134 Morocco 27336 T 121 121
135 Morocco 27337 G 121 121
136 Morocco 27338 A 121 121
137 Morocco 27339 G 121 121
138 Morocco 27340 A 121 121
139 Morocco 27341 A 121 121
140 Morocco 27342 T 121 121
141 Morocco 27343 A 121 121
142 Morocco 27344 A 121 121
143 Morocco 27345 A 121 121
144 Morocco 27346 T 121 121
145 Morocco 27347 A 121 121
146 Morocco 27348 T 121 121
147 Morocco 27349 T 121 121
148 Morocco 27350 C 121 121
149 Morocco 27351 T 121 121
150 Morocco 27352 C 121 121
151 Morocco 27353 A 121 121
152 Morocco 27354 A 121 121
153 Morocco 27355 T 121 121
154 Morocco 27356 T 121 121
155 Morocco 27357 A 121 121
156 Morocco 27358 G 121 121
157 Morocco 27359 A 121 121
158 Morocco 27360 T 121 121
159 Morocco 27361 G 121 121
160 Morocco 27362 A 121 121
161 Morocco 27363 A 121 121
162 Morocco 27364 G 121 121
163 Morocco 27365 A 121 121
164 Morocco 27366 G 121 121
165 Morocco 27367 C 121 121
166 Morocco 27368 A 121 121
167 Morocco 27369 A 121 121
168 Morocco 27370 C 121 121
169 Morocco 27371 C 121 121
170 Morocco 27372 A 121 121
171 Morocco 27373 A 121 121
172 Morocco 27374 T 121 121
173 Morocco 27375 G 121 121
174 Morocco 27376 G 121 121
175 Morocco 27377 A 121 121
176 Morocco 27378 G 121 121
177 Morocco 27379 A 121 121
178 Morocco 27380 T 121 121
179 Morocco 27381 T 121 121
180 Morocco 27382 G 121 121
181 Morocco 27383 A 121 121
182 Morocco 27384 T 121 121
183 Morocco 27385 T 121 121
184 Morocco 27386 A 121 121
185 Morocco 27387 A 121 121