National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Montenegro 27202 A 12 12
1 Montenegro 27203 T 12 12
2 Montenegro 27204 G 12 12
3 Montenegro 27205 T 12 12
4 Montenegro 27206 T 12 12
5 Montenegro 27207 T 12 12
6 Montenegro 27208 C 12 12
7 Montenegro 27209 A 12 12
8 Montenegro 27210 T 12 12
9 Montenegro 27211 C 12 12
10 Montenegro 27212 T 12 12
11 Montenegro 27213 C 12 12
12 Montenegro 27214 G 12 12
13 Montenegro 27215 T 12 12
14 Montenegro 27216 T 12 12
15 Montenegro 27217 G 12 12
16 Montenegro 27218 A 12 12
17 Montenegro 27219 C 12 12
18 Montenegro 27220 T 12 12
19 Montenegro 27221 T 12 12
20 Montenegro 27222 T 12 12
21 Montenegro 27223 C 12 12
22 Montenegro 27224 A 12 12
23 Montenegro 27225 G 12 12
24 Montenegro 27226 G 12 12
25 Montenegro 27227 T 12 12
26 Montenegro 27228 T 12 12
27 Montenegro 27229 A 12 12
28 Montenegro 27230 C 12 12
29 Montenegro 27231 T 12 12
30 Montenegro 27232 A 12 12
31 Montenegro 27233 T 12 12
32 Montenegro 27234 A 12 12
33 Montenegro 27235 G 12 12
34 Montenegro 27236 C 12 12
35 Montenegro 27237 A 12 12
36 Montenegro 27238 G 12 12
37 Montenegro 27239 A 12 12
38 Montenegro 27240 G 12 12
39 Montenegro 27241 A 12 12
40 Montenegro 27242 T 12 12
41 Montenegro 27243 A 12 12
42 Montenegro 27244 T 12 12
43 Montenegro 27245 T 12 12
44 Montenegro 27246 A 12 12
45 Montenegro 27247 C 12 12
46 Montenegro 27248 T 12 12
47 Montenegro 27249 A 12 12
48 Montenegro 27250 A 12 12
49 Montenegro 27251 T 12 12
50 Montenegro 27252 T 12 12
51 Montenegro 27253 A 12 12
52 Montenegro 27254 T 12 12
53 Montenegro 27255 T 12 12
54 Montenegro 27256 A 12 12
55 Montenegro 27257 T 12 12
56 Montenegro 27258 G 12 12
57 Montenegro 27259 A 12 12
58 Montenegro 27260 G 12 12
59 Montenegro 27261 G 12 12
60 Montenegro 27262 A 12 12
61 Montenegro 27263 C 12 12
62 Montenegro 27264 T 12 12
63 Montenegro 27265 T 12 12
64 Montenegro 27266 T 12 12
65 Montenegro 27267 T 12 12
66 Montenegro 27268 A 12 12
67 Montenegro 27269 A 12 12
68 Montenegro 27270 A 12 12
69 Montenegro 27271 G 12 12
70 Montenegro 27272 T 12 12
71 Montenegro 27273 T 12 12
72 Montenegro 27274 T 12 12
73 Montenegro 27275 C 12 12
74 Montenegro 27276 C 12 12
75 Montenegro 27277 A 12 12
76 Montenegro 27278 T 12 12
77 Montenegro 27279 T 12 12
78 Montenegro 27280 T 12 12
79 Montenegro 27281 G 12 12
80 Montenegro 27282 G 12 12
81 Montenegro 27283 A 12 12
82 Montenegro 27284 A 12 12
83 Montenegro 27285 T 12 12
84 Montenegro 27286 C 12 12
85 Montenegro 27287 T 12 12
86 Montenegro 27288 T 12 12
87 Montenegro 27289 G 12 12
88 Montenegro 27290 A 12 12
89 Montenegro 27291 T 12 12
90 Montenegro 27292 T 12 12
91 Montenegro 27293 A 12 12
92 Montenegro 27294 C 12 12
93 Montenegro 27295 A 12 12
94 Montenegro 27296 T 12 12
95 Montenegro 27297 C 12 12
96 Montenegro 27298 A 12 12
97 Montenegro 27299 T 12 12
98 Montenegro 27300 A 12 12
99 Montenegro 27301 A 12 12
100 Montenegro 27302 A 12 12
101 Montenegro 27303 C 12 12
102 Montenegro 27304 C 12 12
103 Montenegro 27305 T 12 12
104 Montenegro 27306 C 12 12
105 Montenegro 27307 A 12 12
106 Montenegro 27308 T 12 12
107 Montenegro 27309 A 12 12
108 Montenegro 27310 A 12 12
109 Montenegro 27311 T 12 12
110 Montenegro 27312 T 12 12
111 Montenegro 27313 A 12 12
112 Montenegro 27314 A 12 12
113 Montenegro 27315 A 12 12
114 Montenegro 27316 A 12 12
115 Montenegro 27317 A 12 12
116 Montenegro 27318 T 12 12
117 Montenegro 27319 T 12 12
118 Montenegro 27320 T 12 12
119 Montenegro 27321 A 12 12
120 Montenegro 27322 T 12 12
121 Montenegro 27323 C 12 12
122 Montenegro 27324 T 12 12
123 Montenegro 27325 A 12 12
124 Montenegro 27326 A 12 12
125 Montenegro 27327 G 12 12
126 Montenegro 27328 T 12 12
127 Montenegro 27329 C 12 12
128 Montenegro 27330 A 12 12
129 Montenegro 27331 C 12 12
130 Montenegro 27332 T 12 12
131 Montenegro 27333 A 12 12
132 Montenegro 27334 A 12 12
133 Montenegro 27335 C 12 12
134 Montenegro 27336 T 12 12
135 Montenegro 27337 G 12 12
136 Montenegro 27338 A 12 12
137 Montenegro 27339 G 12 12
138 Montenegro 27340 A 12 12
139 Montenegro 27341 A 12 12
140 Montenegro 27342 T 12 12
141 Montenegro 27343 A 12 12
142 Montenegro 27344 A 12 12
143 Montenegro 27345 A 12 12
144 Montenegro 27346 T 12 12
145 Montenegro 27347 A 12 12
146 Montenegro 27348 T 12 12
147 Montenegro 27349 T 12 12
148 Montenegro 27350 C 12 12
149 Montenegro 27351 T 12 12
150 Montenegro 27352 C 12 12
151 Montenegro 27353 A 12 12
152 Montenegro 27354 A 12 12
153 Montenegro 27355 T 12 12
154 Montenegro 27356 T 12 12
155 Montenegro 27357 A 12 12
156 Montenegro 27358 G 12 12
157 Montenegro 27359 A 12 12
158 Montenegro 27360 T 12 12
159 Montenegro 27361 G 12 12
160 Montenegro 27362 A 12 12
161 Montenegro 27363 A 12 12
162 Montenegro 27364 G 12 12
163 Montenegro 27365 A 12 12
164 Montenegro 27366 G 12 12
165 Montenegro 27367 C 12 12
166 Montenegro 27368 A 12 12
167 Montenegro 27369 A 12 12
168 Montenegro 27370 C 12 12
169 Montenegro 27371 C 12 12
170 Montenegro 27372 A 12 12
171 Montenegro 27373 A 12 12
172 Montenegro 27374 T 12 12
173 Montenegro 27375 G 12 12
174 Montenegro 27376 G 12 12
175 Montenegro 27377 A 12 12
176 Montenegro 27378 G 12 12
177 Montenegro 27379 A 12 12
178 Montenegro 27380 T 12 12
179 Montenegro 27381 T 12 12
180 Montenegro 27382 G 12 12
181 Montenegro 27383 A 12 12
182 Montenegro 27384 T 12 12
183 Montenegro 27385 T 12 12
184 Montenegro 27386 A 12 12
185 Montenegro 27387 A 12 12