National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mongolia 27202 A 7 7
1 Mongolia 27203 T 7 7
2 Mongolia 27204 G 7 7
3 Mongolia 27205 T 7 7
4 Mongolia 27206 T 7 7
5 Mongolia 27207 T 7 7
6 Mongolia 27208 C 7 7
7 Mongolia 27209 A 7 7
8 Mongolia 27210 T 7 7
9 Mongolia 27211 C 7 7
10 Mongolia 27212 T 7 7
11 Mongolia 27213 C 7 7
12 Mongolia 27214 G 7 7
13 Mongolia 27215 T 7 7
14 Mongolia 27216 T 7 7
15 Mongolia 27217 G 7 7
16 Mongolia 27218 A 7 7
17 Mongolia 27219 C 7 7
18 Mongolia 27220 T 7 7
19 Mongolia 27221 T 7 7
20 Mongolia 27222 T 7 7
21 Mongolia 27223 C 7 7
22 Mongolia 27224 A 7 7
23 Mongolia 27225 G 7 7
24 Mongolia 27226 G 7 7
25 Mongolia 27227 T 7 7
26 Mongolia 27228 T 7 7
27 Mongolia 27229 A 7 7
28 Mongolia 27230 C 7 7
29 Mongolia 27231 T 7 7
30 Mongolia 27232 A 7 7
31 Mongolia 27233 T 7 7
32 Mongolia 27234 A 7 7
33 Mongolia 27235 G 7 7
34 Mongolia 27236 C 7 7
35 Mongolia 27237 A 7 7
36 Mongolia 27238 G 7 7
37 Mongolia 27239 A 7 7
38 Mongolia 27240 G 7 7
39 Mongolia 27241 A 7 7
40 Mongolia 27242 T 7 7
41 Mongolia 27243 A 7 7
42 Mongolia 27244 T 7 7
43 Mongolia 27245 T 7 7
44 Mongolia 27246 A 7 7
45 Mongolia 27247 C 7 7
46 Mongolia 27248 T 7 7
47 Mongolia 27249 A 7 7
48 Mongolia 27250 A 7 7
49 Mongolia 27251 T 7 7
50 Mongolia 27252 T 7 7
51 Mongolia 27253 A 7 7
52 Mongolia 27254 T 7 7
53 Mongolia 27255 T 7 7
54 Mongolia 27256 A 7 7
55 Mongolia 27257 T 7 7
56 Mongolia 27258 G 7 7
57 Mongolia 27259 A 7 7
58 Mongolia 27260 G 7 7
59 Mongolia 27261 G 7 7
60 Mongolia 27262 A 7 7
61 Mongolia 27263 C 7 7
62 Mongolia 27264 T 7 7
63 Mongolia 27265 T 7 7
64 Mongolia 27266 T 7 7
65 Mongolia 27267 T 7 7
66 Mongolia 27268 A 7 7
67 Mongolia 27269 A 7 7
68 Mongolia 27270 A 7 7
69 Mongolia 27271 G 7 7
70 Mongolia 27272 T 7 7
71 Mongolia 27273 T 7 7
72 Mongolia 27274 T 7 7
73 Mongolia 27275 C 7 7
74 Mongolia 27276 C 7 7
75 Mongolia 27277 A 7 7
76 Mongolia 27278 T 7 7
77 Mongolia 27279 T 7 7
78 Mongolia 27280 T 7 7
79 Mongolia 27281 G 7 7
80 Mongolia 27282 G 7 7
81 Mongolia 27283 A 7 7
82 Mongolia 27284 A 7 7
83 Mongolia 27285 T 7 7
84 Mongolia 27286 C 7 7
85 Mongolia 27287 T 7 7
86 Mongolia 27288 T 7 7
87 Mongolia 27289 G 7 7
88 Mongolia 27290 A 7 7
89 Mongolia 27291 T 7 7
90 Mongolia 27292 T 7 7
91 Mongolia 27293 A 7 7
92 Mongolia 27294 C 7 7
93 Mongolia 27295 A 7 7
94 Mongolia 27296 T 7 7
95 Mongolia 27297 C 7 7
96 Mongolia 27298 A 7 7
97 Mongolia 27299 T 7 7
98 Mongolia 27300 A 7 7
99 Mongolia 27301 A 7 7
100 Mongolia 27302 A 7 7
101 Mongolia 27303 C 7 7
102 Mongolia 27304 C 7 7
103 Mongolia 27305 T 7 7
104 Mongolia 27306 C 7 7
105 Mongolia 27307 A 7 7
106 Mongolia 27308 T 7 7
107 Mongolia 27309 A 7 7
108 Mongolia 27310 A 7 7
109 Mongolia 27311 T 7 7
110 Mongolia 27312 T 7 7
111 Mongolia 27313 A 7 7
112 Mongolia 27314 A 7 7
113 Mongolia 27315 A 7 7
114 Mongolia 27316 A 7 7
115 Mongolia 27317 A 7 7
116 Mongolia 27318 T 7 7
117 Mongolia 27319 T 7 7
118 Mongolia 27320 T 7 7
119 Mongolia 27321 A 7 7
120 Mongolia 27322 T 7 7
121 Mongolia 27323 C 7 7
122 Mongolia 27324 T 7 7
123 Mongolia 27325 A 7 7
124 Mongolia 27326 A 7 7
125 Mongolia 27327 G 7 7
126 Mongolia 27328 T 7 7
127 Mongolia 27329 C 7 7
128 Mongolia 27330 A 7 7
129 Mongolia 27331 C 7 7
130 Mongolia 27332 T 7 7
131 Mongolia 27333 A 7 7
132 Mongolia 27334 A 7 7
133 Mongolia 27335 C 7 7
134 Mongolia 27336 T 7 7
135 Mongolia 27337 G 7 7
136 Mongolia 27338 A 7 7
137 Mongolia 27339 G 7 7
138 Mongolia 27340 A 7 7
139 Mongolia 27341 A 7 7
140 Mongolia 27342 T 7 7
141 Mongolia 27343 A 7 7
142 Mongolia 27344 A 7 7
143 Mongolia 27345 A 7 7
144 Mongolia 27346 T 7 7
145 Mongolia 27347 A 7 7
146 Mongolia 27348 T 7 7
147 Mongolia 27349 T 7 7
148 Mongolia 27350 C 7 7
149 Mongolia 27351 T 7 7
150 Mongolia 27352 C 7 7
151 Mongolia 27353 A 7 7
152 Mongolia 27354 A 7 7
153 Mongolia 27355 T 7 7
154 Mongolia 27356 T 7 7
155 Mongolia 27357 A 7 7
156 Mongolia 27358 G 7 7
157 Mongolia 27359 A 7 7
158 Mongolia 27360 T 7 7
159 Mongolia 27361 G 7 7
160 Mongolia 27362 A 7 7
161 Mongolia 27363 A 7 7
162 Mongolia 27364 G 7 7
163 Mongolia 27365 A 7 7
164 Mongolia 27366 G 7 7
165 Mongolia 27367 C 7 7
166 Mongolia 27368 A 7 7
167 Mongolia 27369 A 7 7
168 Mongolia 27370 C 7 7
169 Mongolia 27371 C 7 7
170 Mongolia 27372 A 7 7
171 Mongolia 27373 A 7 7
172 Mongolia 27374 T 7 7
173 Mongolia 27375 G 7 7
174 Mongolia 27376 G 7 7
175 Mongolia 27377 A 7 7
176 Mongolia 27378 G 7 7
177 Mongolia 27379 A 7 7
178 Mongolia 27380 T 7 7
179 Mongolia 27381 T 7 7
180 Mongolia 27382 G 7 7
181 Mongolia 27383 A 7 7
182 Mongolia 27384 T 7 7
183 Mongolia 27385 T 7 7
184 Mongolia 27386 A 7 7
185 Mongolia 27387 A 7 7