National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Moldova 27202 A 9 9
1 Moldova 27203 T 9 9
2 Moldova 27204 G 9 9
3 Moldova 27205 T 9 9
4 Moldova 27206 T 9 9
5 Moldova 27207 T 9 9
6 Moldova 27208 C 9 9
7 Moldova 27209 A 9 9
8 Moldova 27210 T 9 9
9 Moldova 27211 C 9 9
10 Moldova 27212 T 9 9
11 Moldova 27213 C 9 9
12 Moldova 27214 G 9 9
13 Moldova 27215 T 9 9
14 Moldova 27216 T 9 9
15 Moldova 27217 G 9 9
16 Moldova 27218 A 9 9
17 Moldova 27219 C 9 9
18 Moldova 27220 T 9 9
19 Moldova 27221 T 9 9
20 Moldova 27222 T 9 9
21 Moldova 27223 C 9 9
22 Moldova 27224 A 9 9
23 Moldova 27225 G 9 9
24 Moldova 27226 G 9 9
25 Moldova 27227 T 9 9
26 Moldova 27228 T 9 9
27 Moldova 27229 A 9 9
28 Moldova 27230 C 9 9
29 Moldova 27231 T 9 9
30 Moldova 27232 A 9 9
31 Moldova 27233 T 9 9
32 Moldova 27234 A 9 9
33 Moldova 27235 G 9 9
34 Moldova 27236 C 9 9
35 Moldova 27237 A 9 9
36 Moldova 27238 G 9 9
37 Moldova 27239 A 9 9
38 Moldova 27240 G 9 9
39 Moldova 27241 A 9 9
40 Moldova 27242 T 9 9
41 Moldova 27243 A 9 9
42 Moldova 27244 T 9 9
43 Moldova 27245 T 9 9
44 Moldova 27246 A 9 9
45 Moldova 27247 C 9 9
46 Moldova 27248 T 9 9
47 Moldova 27249 A 9 9
48 Moldova 27250 A 8 8
49 Moldova 27251 T 8 8
50 Moldova 27252 T 8 8
51 Moldova 27253 A 8 8
52 Moldova 27254 T 8 8
53 Moldova 27255 T 8 8
54 Moldova 27256 A 8 8
55 Moldova 27257 T 8 8
56 Moldova 27258 G 8 8
57 Moldova 27259 A 8 8
58 Moldova 27260 G 8 8
59 Moldova 27261 G 8 8
60 Moldova 27262 A 8 8
61 Moldova 27263 C 8 8
62 Moldova 27264 T 8 8
63 Moldova 27265 T 8 8
64 Moldova 27266 T 8 8
65 Moldova 27267 T 8 8
66 Moldova 27268 A 8 8
67 Moldova 27269 A 8 8
68 Moldova 27270 A 8 8
69 Moldova 27271 G 8 8
70 Moldova 27272 T 8 8
71 Moldova 27273 T 8 8
72 Moldova 27274 T 8 8
73 Moldova 27275 C 8 8
74 Moldova 27276 C 8 8
75 Moldova 27277 A 8 8
76 Moldova 27278 T 8 8
77 Moldova 27279 T 8 8
78 Moldova 27280 T 8 8
79 Moldova 27281 G 7 7
80 Moldova 27282 G 7 7
81 Moldova 27283 A 7 7
82 Moldova 27284 A 7 7
83 Moldova 27285 T 7 7
84 Moldova 27286 C 7 7
85 Moldova 27287 T 7 7
86 Moldova 27288 T 7 7
87 Moldova 27289 G 7 7
88 Moldova 27290 A 7 7
89 Moldova 27291 T 7 7
90 Moldova 27292 T 7 7
91 Moldova 27293 A 7 7
92 Moldova 27294 C 7 7
93 Moldova 27295 A 7 7
94 Moldova 27296 T 7 7
95 Moldova 27297 C 7 7
96 Moldova 27298 A 7 7
97 Moldova 27299 T 7 7
98 Moldova 27300 A 7 7
99 Moldova 27301 A 7 7
100 Moldova 27302 A 7 7
101 Moldova 27303 C 7 7
102 Moldova 27304 C 7 7
103 Moldova 27305 T 7 7
104 Moldova 27306 C 7 7
105 Moldova 27307 A 7 7
106 Moldova 27308 T 7 7
107 Moldova 27309 A 7 7
108 Moldova 27310 A 7 7
109 Moldova 27311 T 7 7
110 Moldova 27312 T 7 7
111 Moldova 27313 A 7 7
112 Moldova 27314 A 7 7
113 Moldova 27315 A 7 7
114 Moldova 27316 A 7 7
115 Moldova 27317 A 7 7
116 Moldova 27318 T 7 7
117 Moldova 27319 T 7 7
118 Moldova 27320 T 7 7
119 Moldova 27321 A 7 7
120 Moldova 27322 T 7 7
121 Moldova 27323 C 7 7
122 Moldova 27324 T 7 7
123 Moldova 27325 A 7 7
124 Moldova 27326 A 7 7
125 Moldova 27327 G 7 7
126 Moldova 27328 T 7 7
127 Moldova 27329 C 7 7
128 Moldova 27330 A 7 7
129 Moldova 27331 C 7 7
130 Moldova 27332 T 7 7
131 Moldova 27333 A 7 7
132 Moldova 27334 A 7 7
133 Moldova 27335 C 7 7
134 Moldova 27336 T 7 7
135 Moldova 27337 G 7 7
136 Moldova 27338 A 7 7
137 Moldova 27339 G 7 7
138 Moldova 27340 A 7 7
139 Moldova 27341 A 7 7
140 Moldova 27342 T 7 7
141 Moldova 27343 A 7 7
142 Moldova 27344 A 7 7
143 Moldova 27345 A 7 7
144 Moldova 27346 T 7 7
145 Moldova 27347 A 7 7
146 Moldova 27348 T 7 7
147 Moldova 27349 T 7 7
148 Moldova 27350 C 7 7
149 Moldova 27351 T 7 7
150 Moldova 27352 C 7 7
151 Moldova 27353 A 7 7
152 Moldova 27354 A 7 7
153 Moldova 27355 T 7 7
154 Moldova 27356 T 7 7
155 Moldova 27357 A 7 7
156 Moldova 27358 G 7 7
157 Moldova 27359 A 7 7
158 Moldova 27360 T 7 7
159 Moldova 27361 G 7 7
160 Moldova 27362 A 7 7
161 Moldova 27363 A 7 7
162 Moldova 27364 G 7 7
163 Moldova 27365 A 7 7
164 Moldova 27366 G 7 7
165 Moldova 27367 C 7 7
166 Moldova 27368 A 7 7
167 Moldova 27369 A 7 7
168 Moldova 27370 C 7 7
169 Moldova 27371 C 7 7
170 Moldova 27372 A 7 7
171 Moldova 27373 A 7 7
172 Moldova 27374 T 7 7
173 Moldova 27375 G 7 7
174 Moldova 27376 G 7 7
175 Moldova 27377 A 7 7
176 Moldova 27378 G 7 7
177 Moldova 27379 A 7 7
178 Moldova 27380 T 7 7
179 Moldova 27381 T 7 7
180 Moldova 27382 G 7 7
181 Moldova 27383 A 7 7
182 Moldova 27384 T 7 7
183 Moldova 27385 T 7 7
184 Moldova 27386 A 7 7
185 Moldova 27387 A 7 7