National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12 1                                  
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                   1                
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9       1                            
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lithuania 27202 A 235 235
1 Lithuania 27203 T 235 235
2 Lithuania 27204 G 235 235
3 Lithuania 27205 T 235 235
4 Lithuania 27206 T 235 235
5 Lithuania 27207 T 235 235
6 Lithuania 27208 C 235 235
7 Lithuania 27209 A 235 235
8 Lithuania 27210 T 235 235
9 Lithuania 27211 C 235 235
10 Lithuania 27212 T 235 235
11 Lithuania 27213 C 235 235
12 Lithuania 27214 G 235 235
13 Lithuania 27215 T 235 235
14 Lithuania 27216 T 235 235
15 Lithuania 27217 G 235 235
16 Lithuania 27218 A 235 235
17 Lithuania 27219 C 235 235
18 Lithuania 27220 T 235 235
19 Lithuania 27221 T 235 235
20 Lithuania 27222 T 235 235
21 Lithuania 27223 C 235 235
22 Lithuania 27224 A 235 235
23 Lithuania 27225 G 235 235
24 Lithuania 27226 G T 235 234 Val9Phe
25 Lithuania 27227 T 235 235
26 Lithuania 27228 T 235 235
27 Lithuania 27229 A 235 235
28 Lithuania 27230 C 235 235
29 Lithuania 27231 T 235 235
30 Lithuania 27232 A 235 235
31 Lithuania 27233 T 235 235
32 Lithuania 27234 A 235 235
33 Lithuania 27235 G 235 235
34 Lithuania 27236 C 235 235
35 Lithuania 27237 A 235 235
36 Lithuania 27238 G 235 235
37 Lithuania 27239 A 235 235
38 Lithuania 27240 G 235 235
39 Lithuania 27241 A 235 235
40 Lithuania 27242 T 235 235
41 Lithuania 27243 A 235 235
42 Lithuania 27244 T 235 235
43 Lithuania 27245 T 235 235
44 Lithuania 27246 A 235 235
45 Lithuania 27247 C 235 235
46 Lithuania 27248 T 235 235
47 Lithuania 27249 A 235 235
48 Lithuania 27250 A 235 235
49 Lithuania 27251 T 235 235
50 Lithuania 27252 T 235 235
51 Lithuania 27253 A 235 235
52 Lithuania 27254 T 235 235
53 Lithuania 27255 T 235 235
54 Lithuania 27256 A 235 235
55 Lithuania 27257 T 235 235
56 Lithuania 27258 G 235 235
57 Lithuania 27259 A 235 235
58 Lithuania 27260 G 235 235
59 Lithuania 27261 G 235 235
60 Lithuania 27262 A 235 235
61 Lithuania 27263 C 235 235
62 Lithuania 27264 T 235 235
63 Lithuania 27265 T 235 235
64 Lithuania 27266 T 235 235
65 Lithuania 27267 T 235 235
66 Lithuania 27268 A 235 235
67 Lithuania 27269 A 235 235
68 Lithuania 27270 A 235 235
69 Lithuania 27271 G 235 235
70 Lithuania 27272 T 235 235
71 Lithuania 27273 T 235 235
72 Lithuania 27274 T 235 235
73 Lithuania 27275 C 235 235
74 Lithuania 27276 C 235 235
75 Lithuania 27277 A 235 235
76 Lithuania 27278 T 235 235
77 Lithuania 27279 T 235 235
78 Lithuania 27280 T 235 235
79 Lithuania 27281 G 235 235
80 Lithuania 27282 G 235 235
81 Lithuania 27283 A 235 235
82 Lithuania 27284 A 235 235
83 Lithuania 27285 T 235 235
84 Lithuania 27286 C 235 235
85 Lithuania 27287 T 235 235
86 Lithuania 27288 T 235 235
87 Lithuania 27289 G 235 235
88 Lithuania 27290 A 235 235
89 Lithuania 27291 T 235 235
90 Lithuania 27292 T 235 235
91 Lithuania 27293 A 235 235
92 Lithuania 27294 C 235 235
93 Lithuania 27295 A 235 235
94 Lithuania 27296 T 235 235
95 Lithuania 27297 C 235 235
96 Lithuania 27298 A 235 235
97 Lithuania 27299 T 235 235
98 Lithuania 27300 A 235 235
99 Lithuania 27301 A 235 235
100 Lithuania 27302 A 235 235
101 Lithuania 27303 C 235 235
102 Lithuania 27304 C 235 235
103 Lithuania 27305 T 235 235
104 Lithuania 27306 C 235 235
105 Lithuania 27307 A 235 235
106 Lithuania 27308 T 235 235
107 Lithuania 27309 A 235 235
108 Lithuania 27310 A 235 235
109 Lithuania 27311 T 235 235
110 Lithuania 27312 T 235 235
111 Lithuania 27313 A 235 235
112 Lithuania 27314 A 235 235
113 Lithuania 27315 A 235 235
114 Lithuania 27316 A 235 235
115 Lithuania 27317 A 235 235
116 Lithuania 27318 T 235 235
117 Lithuania 27319 T 235 235
118 Lithuania 27320 T 235 235
119 Lithuania 27321 A 235 235
120 Lithuania 27322 T 235 235
121 Lithuania 27323 C 235 235
122 Lithuania 27324 T 235 235
123 Lithuania 27325 A 235 235
124 Lithuania 27326 A 235 235
125 Lithuania 27327 G 235 235
126 Lithuania 27328 T 235 235
127 Lithuania 27329 C 235 235
128 Lithuania 27330 A 235 235
129 Lithuania 27331 C 235 235
130 Lithuania 27332 T 235 235
131 Lithuania 27333 A 235 235
132 Lithuania 27334 A 235 235
133 Lithuania 27335 C 235 235
134 Lithuania 27336 T 235 235
135 Lithuania 27337 G 235 235
136 Lithuania 27338 A 235 235
137 Lithuania 27339 G 235 235
138 Lithuania 27340 A 235 235
139 Lithuania 27341 A 235 235
140 Lithuania 27342 T C 235 233 Asn47Asn
141 Lithuania 27343 A 235 235
142 Lithuania 27344 A 235 235
143 Lithuania 27345 A 235 235
144 Lithuania 27346 T 235 235
145 Lithuania 27347 A 235 235
146 Lithuania 27348 T 235 235
147 Lithuania 27349 T 235 235
148 Lithuania 27350 C 235 235
149 Lithuania 27351 T 235 235
150 Lithuania 27352 C 235 235
151 Lithuania 27353 A 235 235
152 Lithuania 27354 A 235 235
153 Lithuania 27355 T 235 235
154 Lithuania 27356 T 235 235
155 Lithuania 27357 A 235 235
156 Lithuania 27358 G 235 235
157 Lithuania 27359 A 235 235
158 Lithuania 27360 T 235 235
159 Lithuania 27361 G 235 235
160 Lithuania 27362 A 235 235
161 Lithuania 27363 A 235 235
162 Lithuania 27364 G 235 235
163 Lithuania 27365 A 235 235
164 Lithuania 27366 G 235 235
165 Lithuania 27367 C 235 235
166 Lithuania 27368 A 235 235
167 Lithuania 27369 A 235 235
168 Lithuania 27370 C 235 235
169 Lithuania 27371 C 235 235
170 Lithuania 27372 A 235 235
171 Lithuania 27373 A 235 235
172 Lithuania 27374 T 235 235
173 Lithuania 27375 G 235 235
174 Lithuania 27376 G 235 235
175 Lithuania 27377 A 235 235
176 Lithuania 27378 G 235 235
177 Lithuania 27379 A 235 235
178 Lithuania 27380 T 235 235
179 Lithuania 27381 T 235 235
180 Lithuania 27382 G 235 234
181 Lithuania 27383 A C 235 234 Asp61Ala
182 Lithuania 27384 T 235 235
183 Lithuania 27385 T 235 235
184 Lithuania 27386 A 235 235
185 Lithuania 27387 A 235 235