National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Lebanon 27202 A 23 23
1 Lebanon 27203 T 23 23
2 Lebanon 27204 G 23 23
3 Lebanon 27205 T 23 23
4 Lebanon 27206 T 23 23
5 Lebanon 27207 T 23 23
6 Lebanon 27208 C 23 23
7 Lebanon 27209 A 23 23
8 Lebanon 27210 T 23 23
9 Lebanon 27211 C 23 23
10 Lebanon 27212 T 23 23
11 Lebanon 27213 C 23 23
12 Lebanon 27214 G 23 23
13 Lebanon 27215 T 23 23
14 Lebanon 27216 T 23 23
15 Lebanon 27217 G 23 23
16 Lebanon 27218 A 23 23
17 Lebanon 27219 C 23 23
18 Lebanon 27220 T 23 23
19 Lebanon 27221 T 23 23
20 Lebanon 27222 T 23 23
21 Lebanon 27223 C 23 23
22 Lebanon 27224 A 23 23
23 Lebanon 27225 G 23 23
24 Lebanon 27226 G 23 23
25 Lebanon 27227 T 23 23
26 Lebanon 27228 T 23 23
27 Lebanon 27229 A 23 23
28 Lebanon 27230 C 23 23
29 Lebanon 27231 T 23 23
30 Lebanon 27232 A 23 23
31 Lebanon 27233 T 23 23
32 Lebanon 27234 A 23 23
33 Lebanon 27235 G 23 23
34 Lebanon 27236 C 23 23
35 Lebanon 27237 A 23 23
36 Lebanon 27238 G 23 23
37 Lebanon 27239 A 23 23
38 Lebanon 27240 G 23 23
39 Lebanon 27241 A 23 23
40 Lebanon 27242 T 23 23
41 Lebanon 27243 A 23 23
42 Lebanon 27244 T 23 23
43 Lebanon 27245 T 23 23
44 Lebanon 27246 A 23 23
45 Lebanon 27247 C 23 23
46 Lebanon 27248 T 23 23
47 Lebanon 27249 A 23 23
48 Lebanon 27250 A 23 23
49 Lebanon 27251 T 23 23
50 Lebanon 27252 T 23 23
51 Lebanon 27253 A 23 23
52 Lebanon 27254 T 23 23
53 Lebanon 27255 T 23 23
54 Lebanon 27256 A 23 23
55 Lebanon 27257 T 23 23
56 Lebanon 27258 G 23 23
57 Lebanon 27259 A 23 23
58 Lebanon 27260 G 23 23
59 Lebanon 27261 G 23 23
60 Lebanon 27262 A 23 23
61 Lebanon 27263 C 23 23
62 Lebanon 27264 T 23 23
63 Lebanon 27265 T 23 23
64 Lebanon 27266 T 23 23
65 Lebanon 27267 T 23 23
66 Lebanon 27268 A 23 23
67 Lebanon 27269 A 23 23
68 Lebanon 27270 A 23 23
69 Lebanon 27271 G 23 23
70 Lebanon 27272 T 23 23
71 Lebanon 27273 T 23 23
72 Lebanon 27274 T 23 23
73 Lebanon 27275 C 23 23
74 Lebanon 27276 C 23 23
75 Lebanon 27277 A 23 23
76 Lebanon 27278 T 23 23
77 Lebanon 27279 T 23 23
78 Lebanon 27280 T 23 23
79 Lebanon 27281 G 23 23
80 Lebanon 27282 G 23 23
81 Lebanon 27283 A 23 23
82 Lebanon 27284 A 23 23
83 Lebanon 27285 T 23 23
84 Lebanon 27286 C 23 23
85 Lebanon 27287 T 23 23
86 Lebanon 27288 T 23 23
87 Lebanon 27289 G 23 23
88 Lebanon 27290 A 23 23
89 Lebanon 27291 T 23 23
90 Lebanon 27292 T 23 23
91 Lebanon 27293 A 23 23
92 Lebanon 27294 C 23 23
93 Lebanon 27295 A 23 23
94 Lebanon 27296 T 23 23
95 Lebanon 27297 C 23 23
96 Lebanon 27298 A 23 23
97 Lebanon 27299 T 23 23
98 Lebanon 27300 A 23 23
99 Lebanon 27301 A 23 23
100 Lebanon 27302 A 23 23
101 Lebanon 27303 C 23 23
102 Lebanon 27304 C 23 23
103 Lebanon 27305 T 23 23
104 Lebanon 27306 C 23 23
105 Lebanon 27307 A 23 23
106 Lebanon 27308 T 23 23
107 Lebanon 27309 A 23 23
108 Lebanon 27310 A 23 23
109 Lebanon 27311 T 23 23
110 Lebanon 27312 T 23 23
111 Lebanon 27313 A 23 23
112 Lebanon 27314 A 23 23
113 Lebanon 27315 A 23 23
114 Lebanon 27316 A 23 23
115 Lebanon 27317 A 23 23
116 Lebanon 27318 T 23 23
117 Lebanon 27319 T 23 23
118 Lebanon 27320 T 23 23
119 Lebanon 27321 A 23 23
120 Lebanon 27322 T 23 23
121 Lebanon 27323 C 23 23
122 Lebanon 27324 T 23 23
123 Lebanon 27325 A 23 23
124 Lebanon 27326 A 23 23
125 Lebanon 27327 G 23 23
126 Lebanon 27328 T 23 23
127 Lebanon 27329 C 23 23
128 Lebanon 27330 A 23 23
129 Lebanon 27331 C 23 23
130 Lebanon 27332 T 23 23
131 Lebanon 27333 A 23 23
132 Lebanon 27334 A 23 23
133 Lebanon 27335 C 23 23
134 Lebanon 27336 T 23 23
135 Lebanon 27337 G 23 23
136 Lebanon 27338 A 23 23
137 Lebanon 27339 G 23 23
138 Lebanon 27340 A 23 23
139 Lebanon 27341 A 23 23
140 Lebanon 27342 T 23 23
141 Lebanon 27343 A 23 23
142 Lebanon 27344 A 23 23
143 Lebanon 27345 A 23 23
144 Lebanon 27346 T 23 23
145 Lebanon 27347 A 23 23
146 Lebanon 27348 T 23 23
147 Lebanon 27349 T 23 23
148 Lebanon 27350 C 23 23
149 Lebanon 27351 T 23 23
150 Lebanon 27352 C 23 23
151 Lebanon 27353 A 23 23
152 Lebanon 27354 A 23 23
153 Lebanon 27355 T 23 23
154 Lebanon 27356 T 23 23
155 Lebanon 27357 A 23 23
156 Lebanon 27358 G 23 23
157 Lebanon 27359 A 23 23
158 Lebanon 27360 T 23 23
159 Lebanon 27361 G 23 23
160 Lebanon 27362 A 23 23
161 Lebanon 27363 A 23 23
162 Lebanon 27364 G 23 23
163 Lebanon 27365 A 23 23
164 Lebanon 27366 G 23 23
165 Lebanon 27367 C 23 23
166 Lebanon 27368 A 23 23
167 Lebanon 27369 A 23 23
168 Lebanon 27370 C 23 23
169 Lebanon 27371 C 23 23
170 Lebanon 27372 A 23 23
171 Lebanon 27373 A 23 23
172 Lebanon 27374 T 23 23
173 Lebanon 27375 G 23 23
174 Lebanon 27376 G 23 23
175 Lebanon 27377 A 23 23
176 Lebanon 27378 G 23 23
177 Lebanon 27379 A 23 23
178 Lebanon 27380 T 23 23
179 Lebanon 27381 T 23 23
180 Lebanon 27382 G 23 23
181 Lebanon 27383 A 23 23
182 Lebanon 27384 T 23 23
183 Lebanon 27385 T 23 23
184 Lebanon 27386 A 23 23
185 Lebanon 27387 A 23 23