National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24               1                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Latvia 27202 A 233 233
1 Latvia 27203 T 233 233
2 Latvia 27204 G 233 233
3 Latvia 27205 T 233 233
4 Latvia 27206 T 233 233
5 Latvia 27207 T 233 233
6 Latvia 27208 C 233 233
7 Latvia 27209 A 233 233
8 Latvia 27210 T 233 233
9 Latvia 27211 C 233 233
10 Latvia 27212 T 233 233
11 Latvia 27213 C 233 233
12 Latvia 27214 G 233 233
13 Latvia 27215 T 233 233
14 Latvia 27216 T 233 233
15 Latvia 27217 G 233 233
16 Latvia 27218 A 233 233
17 Latvia 27219 C 233 233
18 Latvia 27220 T 233 233
19 Latvia 27221 T 233 233
20 Latvia 27222 T 233 233
21 Latvia 27223 C 233 233
22 Latvia 27224 A 233 233
23 Latvia 27225 G 233 233
24 Latvia 27226 G 233 233
25 Latvia 27227 T 233 233
26 Latvia 27228 T 233 233
27 Latvia 27229 A 233 233
28 Latvia 27230 C 233 233
29 Latvia 27231 T 233 233
30 Latvia 27232 A 233 233
31 Latvia 27233 T 233 233
32 Latvia 27234 A 233 233
33 Latvia 27235 G 233 233
34 Latvia 27236 C 233 233
35 Latvia 27237 A 233 233
36 Latvia 27238 G 233 233
37 Latvia 27239 A 233 233
38 Latvia 27240 G 233 233
39 Latvia 27241 A 233 233
40 Latvia 27242 T 233 233
41 Latvia 27243 A 233 233
42 Latvia 27244 T 233 233
43 Latvia 27245 T 233 233
44 Latvia 27246 A 233 233
45 Latvia 27247 C T 233 231 Leu16Leu
46 Latvia 27248 T 233 233
47 Latvia 27249 A 233 233
48 Latvia 27250 A 233 233
49 Latvia 27251 T 233 233
50 Latvia 27252 T 233 233
51 Latvia 27253 A 233 233
52 Latvia 27254 T 233 233
53 Latvia 27255 T 233 233
54 Latvia 27256 A 233 233
55 Latvia 27257 T 233 233
56 Latvia 27258 G 233 233
57 Latvia 27259 A 233 233
58 Latvia 27260 G 233 233
59 Latvia 27261 G 233 233
60 Latvia 27262 A 233 233
61 Latvia 27263 C 233 233
62 Latvia 27264 T 233 233
63 Latvia 27265 T 233 233
64 Latvia 27266 T 233 233
65 Latvia 27267 T 233 233
66 Latvia 27268 A 233 233
67 Latvia 27269 A 233 233
68 Latvia 27270 A 233 233
69 Latvia 27271 G 233 233
70 Latvia 27272 T 233 233
71 Latvia 27273 T 233 233
72 Latvia 27274 T 233 233
73 Latvia 27275 C 233 233
74 Latvia 27276 C 233 233
75 Latvia 27277 A 233 233
76 Latvia 27278 T 233 233
77 Latvia 27279 T 233 233
78 Latvia 27280 T 233 233
79 Latvia 27281 G 233 233
80 Latvia 27282 G 233 233
81 Latvia 27283 A 233 233
82 Latvia 27284 A 233 233
83 Latvia 27285 T 233 233
84 Latvia 27286 C 233 233
85 Latvia 27287 T 233 233
86 Latvia 27288 T 233 233
87 Latvia 27289 G 233 233
88 Latvia 27290 A 233 233
89 Latvia 27291 T 233 233
90 Latvia 27292 T 233 233
91 Latvia 27293 A 233 233
92 Latvia 27294 C 233 233
93 Latvia 27295 A 233 233
94 Latvia 27296 T 233 233
95 Latvia 27297 C 233 233
96 Latvia 27298 A 233 233
97 Latvia 27299 T 233 233
98 Latvia 27300 A 233 233
99 Latvia 27301 A 233 233
100 Latvia 27302 A 233 233
101 Latvia 27303 C 233 233
102 Latvia 27304 C 233 233
103 Latvia 27305 T 233 233
104 Latvia 27306 C 233 233
105 Latvia 27307 A 233 233
106 Latvia 27308 T 233 233
107 Latvia 27309 A 233 233
108 Latvia 27310 A 233 233
109 Latvia 27311 T 233 233
110 Latvia 27312 T 233 233
111 Latvia 27313 A 233 233
112 Latvia 27314 A 233 233
113 Latvia 27315 A 233 233
114 Latvia 27316 A 233 233
115 Latvia 27317 A 233 233
116 Latvia 27318 T 233 233
117 Latvia 27319 T 233 233
118 Latvia 27320 T 233 233
119 Latvia 27321 A 233 233
120 Latvia 27322 T 233 233
121 Latvia 27323 C 233 233
122 Latvia 27324 T 233 233
123 Latvia 27325 A 233 233
124 Latvia 27326 A 233 233
125 Latvia 27327 G 233 233
126 Latvia 27328 T 233 233
127 Latvia 27329 C 233 233
128 Latvia 27330 A 233 233
129 Latvia 27331 C 233 233
130 Latvia 27332 T 233 233
131 Latvia 27333 A 233 233
132 Latvia 27334 A 233 233
133 Latvia 27335 C 233 233
134 Latvia 27336 T 233 233
135 Latvia 27337 G 233 233
136 Latvia 27338 A 233 233
137 Latvia 27339 G 233 233
138 Latvia 27340 A 233 233
139 Latvia 27341 A 233 233
140 Latvia 27342 T 233 233
141 Latvia 27343 A 233 233
142 Latvia 27344 A 233 233
143 Latvia 27345 A 233 233
144 Latvia 27346 T 233 233
145 Latvia 27347 A 233 233
146 Latvia 27348 T 233 233
147 Latvia 27349 T 233 233
148 Latvia 27350 C 233 233
149 Latvia 27351 T 233 233
150 Latvia 27352 C 233 233
151 Latvia 27353 A 233 233
152 Latvia 27354 A 233 233
153 Latvia 27355 T 233 233
154 Latvia 27356 T 233 233
155 Latvia 27357 A 233 233
156 Latvia 27358 G 233 233
157 Latvia 27359 A 233 233
158 Latvia 27360 T 233 233
159 Latvia 27361 G 233 233
160 Latvia 27362 A 233 233
161 Latvia 27363 A 233 233
162 Latvia 27364 G 233 233
163 Latvia 27365 A 233 233
164 Latvia 27366 G 233 233
165 Latvia 27367 C 233 233
166 Latvia 27368 A 233 233
167 Latvia 27369 A 233 233
168 Latvia 27370 C 233 233
169 Latvia 27371 C 233 233
170 Latvia 27372 A 233 233
171 Latvia 27373 A 233 233
172 Latvia 27374 T 233 233
173 Latvia 27375 G 233 233
174 Latvia 27376 G 233 233
175 Latvia 27377 A 233 233
176 Latvia 27378 G 233 233
177 Latvia 27379 A 233 233
178 Latvia 27380 T 233 233
179 Latvia 27381 T 233 233
180 Latvia 27382 G 233 233
181 Latvia 27383 A 233 233
182 Latvia 27384 T 233 233
183 Latvia 27385 T 233 233
184 Latvia 27386 A 233 233
185 Latvia 27387 A 233 233