National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kuwait 27202 A 8 8
1 Kuwait 27203 T 8 8
2 Kuwait 27204 G 8 8
3 Kuwait 27205 T 8 8
4 Kuwait 27206 T 8 8
5 Kuwait 27207 T 8 8
6 Kuwait 27208 C 8 8
7 Kuwait 27209 A 8 8
8 Kuwait 27210 T 8 8
9 Kuwait 27211 C 8 8
10 Kuwait 27212 T 8 8
11 Kuwait 27213 C 8 8
12 Kuwait 27214 G 8 8
13 Kuwait 27215 T 8 8
14 Kuwait 27216 T 8 8
15 Kuwait 27217 G 8 8
16 Kuwait 27218 A 8 8
17 Kuwait 27219 C 8 8
18 Kuwait 27220 T 8 8
19 Kuwait 27221 T 8 8
20 Kuwait 27222 T 8 8
21 Kuwait 27223 C 8 8
22 Kuwait 27224 A 8 8
23 Kuwait 27225 G 8 8
24 Kuwait 27226 G 8 8
25 Kuwait 27227 T 8 8
26 Kuwait 27228 T 8 8
27 Kuwait 27229 A 8 8
28 Kuwait 27230 C 8 8
29 Kuwait 27231 T 8 8
30 Kuwait 27232 A 8 8
31 Kuwait 27233 T 8 8
32 Kuwait 27234 A 8 8
33 Kuwait 27235 G 8 8
34 Kuwait 27236 C 8 8
35 Kuwait 27237 A 8 8
36 Kuwait 27238 G 8 8
37 Kuwait 27239 A 8 8
38 Kuwait 27240 G 8 8
39 Kuwait 27241 A 8 8
40 Kuwait 27242 T 8 8
41 Kuwait 27243 A 8 8
42 Kuwait 27244 T 8 8
43 Kuwait 27245 T 8 8
44 Kuwait 27246 A 8 8
45 Kuwait 27247 C 8 8
46 Kuwait 27248 T 8 8
47 Kuwait 27249 A 8 8
48 Kuwait 27250 A 8 8
49 Kuwait 27251 T 8 8
50 Kuwait 27252 T 8 8
51 Kuwait 27253 A 8 8
52 Kuwait 27254 T 8 8
53 Kuwait 27255 T 8 8
54 Kuwait 27256 A 8 8
55 Kuwait 27257 T 8 8
56 Kuwait 27258 G 8 8
57 Kuwait 27259 A 8 8
58 Kuwait 27260 G 8 8
59 Kuwait 27261 G 8 8
60 Kuwait 27262 A 8 8
61 Kuwait 27263 C 8 8
62 Kuwait 27264 T 8 8
63 Kuwait 27265 T 8 8
64 Kuwait 27266 T 8 8
65 Kuwait 27267 T 8 8
66 Kuwait 27268 A 8 8
67 Kuwait 27269 A 8 8
68 Kuwait 27270 A 8 8
69 Kuwait 27271 G 8 8
70 Kuwait 27272 T 8 8
71 Kuwait 27273 T 8 8
72 Kuwait 27274 T 8 8
73 Kuwait 27275 C 8 8
74 Kuwait 27276 C 8 8
75 Kuwait 27277 A 8 8
76 Kuwait 27278 T 8 8
77 Kuwait 27279 T 8 8
78 Kuwait 27280 T 8 8
79 Kuwait 27281 G 8 8
80 Kuwait 27282 G 8 8
81 Kuwait 27283 A 8 8
82 Kuwait 27284 A 8 8
83 Kuwait 27285 T 8 8
84 Kuwait 27286 C 8 8
85 Kuwait 27287 T 8 8
86 Kuwait 27288 T 8 8
87 Kuwait 27289 G 8 8
88 Kuwait 27290 A 8 8
89 Kuwait 27291 T 8 8
90 Kuwait 27292 T 8 8
91 Kuwait 27293 A 8 8
92 Kuwait 27294 C 8 8
93 Kuwait 27295 A 8 8
94 Kuwait 27296 T 8 8
95 Kuwait 27297 C 8 8
96 Kuwait 27298 A 8 8
97 Kuwait 27299 T 8 8
98 Kuwait 27300 A 8 8
99 Kuwait 27301 A 8 8
100 Kuwait 27302 A 8 8
101 Kuwait 27303 C 8 8
102 Kuwait 27304 C 8 8
103 Kuwait 27305 T 8 8
104 Kuwait 27306 C 8 8
105 Kuwait 27307 A 8 8
106 Kuwait 27308 T 8 8
107 Kuwait 27309 A 8 8
108 Kuwait 27310 A 8 8
109 Kuwait 27311 T 8 8
110 Kuwait 27312 T 8 8
111 Kuwait 27313 A 8 8
112 Kuwait 27314 A 8 8
113 Kuwait 27315 A 8 8
114 Kuwait 27316 A 8 8
115 Kuwait 27317 A 8 8
116 Kuwait 27318 T 8 8
117 Kuwait 27319 T 8 8
118 Kuwait 27320 T 8 8
119 Kuwait 27321 A 8 8
120 Kuwait 27322 T 8 8
121 Kuwait 27323 C 8 8
122 Kuwait 27324 T 8 8
123 Kuwait 27325 A 8 8
124 Kuwait 27326 A 8 8
125 Kuwait 27327 G 8 8
126 Kuwait 27328 T 8 8
127 Kuwait 27329 C 8 8
128 Kuwait 27330 A 8 8
129 Kuwait 27331 C 8 8
130 Kuwait 27332 T 8 8
131 Kuwait 27333 A 8 8
132 Kuwait 27334 A 8 8
133 Kuwait 27335 C 8 8
134 Kuwait 27336 T 8 8
135 Kuwait 27337 G 8 8
136 Kuwait 27338 A 8 8
137 Kuwait 27339 G 8 8
138 Kuwait 27340 A 8 8
139 Kuwait 27341 A 8 8
140 Kuwait 27342 T 8 8
141 Kuwait 27343 A 8 8
142 Kuwait 27344 A 8 8
143 Kuwait 27345 A 8 8
144 Kuwait 27346 T 8 8
145 Kuwait 27347 A 8 8
146 Kuwait 27348 T 8 8
147 Kuwait 27349 T 8 8
148 Kuwait 27350 C 8 8
149 Kuwait 27351 T 8 8
150 Kuwait 27352 C 8 8
151 Kuwait 27353 A 8 8
152 Kuwait 27354 A 8 8
153 Kuwait 27355 T 8 8
154 Kuwait 27356 T 8 8
155 Kuwait 27357 A 8 8
156 Kuwait 27358 G 8 8
157 Kuwait 27359 A 8 8
158 Kuwait 27360 T 8 8
159 Kuwait 27361 G 8 8
160 Kuwait 27362 A 8 8
161 Kuwait 27363 A 8 8
162 Kuwait 27364 G 8 8
163 Kuwait 27365 A 8 8
164 Kuwait 27366 G 8 8
165 Kuwait 27367 C 8 8
166 Kuwait 27368 A 8 8
167 Kuwait 27369 A 8 8
168 Kuwait 27370 C 8 8
169 Kuwait 27371 C 8 8
170 Kuwait 27372 A 8 8
171 Kuwait 27373 A 8 8
172 Kuwait 27374 T 8 8
173 Kuwait 27375 G 8 8
174 Kuwait 27376 G 8 8
175 Kuwait 27377 A 8 8
176 Kuwait 27378 G 8 8
177 Kuwait 27379 A 8 8
178 Kuwait 27380 T 8 8
179 Kuwait 27381 T 8 8
180 Kuwait 27382 G 8 8
181 Kuwait 27383 A 8 8
182 Kuwait 27384 T 8 8
183 Kuwait 27385 T 8 8
184 Kuwait 27386 A 8 8
185 Kuwait 27387 A 8 8