National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kazakhstan 27202 A 53 53
1 Kazakhstan 27203 T 53 53
2 Kazakhstan 27204 G 53 53
3 Kazakhstan 27205 T 53 53
4 Kazakhstan 27206 T 53 53
5 Kazakhstan 27207 T 53 53
6 Kazakhstan 27208 C 53 53
7 Kazakhstan 27209 A 53 53
8 Kazakhstan 27210 T 53 53
9 Kazakhstan 27211 C 53 53
10 Kazakhstan 27212 T 53 53
11 Kazakhstan 27213 C 53 53
12 Kazakhstan 27214 G 53 53
13 Kazakhstan 27215 T 53 53
14 Kazakhstan 27216 T 53 53
15 Kazakhstan 27217 G 53 53
16 Kazakhstan 27218 A 53 53
17 Kazakhstan 27219 C 53 53
18 Kazakhstan 27220 T 53 53
19 Kazakhstan 27221 T 53 53
20 Kazakhstan 27222 T 53 53
21 Kazakhstan 27223 C 53 53
22 Kazakhstan 27224 A 53 53
23 Kazakhstan 27225 G 53 53
24 Kazakhstan 27226 G 53 53
25 Kazakhstan 27227 T 53 53
26 Kazakhstan 27228 T 53 53
27 Kazakhstan 27229 A 53 53
28 Kazakhstan 27230 C 53 53
29 Kazakhstan 27231 T 53 53
30 Kazakhstan 27232 A 53 53
31 Kazakhstan 27233 T 53 53
32 Kazakhstan 27234 A 53 53
33 Kazakhstan 27235 G 53 53
34 Kazakhstan 27236 C 53 53
35 Kazakhstan 27237 A 53 53
36 Kazakhstan 27238 G 53 53
37 Kazakhstan 27239 A 53 53
38 Kazakhstan 27240 G 53 53
39 Kazakhstan 27241 A 53 53
40 Kazakhstan 27242 T 53 53
41 Kazakhstan 27243 A 53 53
42 Kazakhstan 27244 T 53 53
43 Kazakhstan 27245 T 53 53
44 Kazakhstan 27246 A 53 53
45 Kazakhstan 27247 C 53 53
46 Kazakhstan 27248 T 53 53
47 Kazakhstan 27249 A 53 53
48 Kazakhstan 27250 A 53 53
49 Kazakhstan 27251 T 53 53
50 Kazakhstan 27252 T 53 53
51 Kazakhstan 27253 A 53 53
52 Kazakhstan 27254 T 53 53
53 Kazakhstan 27255 T 53 53
54 Kazakhstan 27256 A 53 53
55 Kazakhstan 27257 T 53 53
56 Kazakhstan 27258 G 53 53
57 Kazakhstan 27259 A 53 53
58 Kazakhstan 27260 G 53 53
59 Kazakhstan 27261 G 53 53
60 Kazakhstan 27262 A 53 53
61 Kazakhstan 27263 C 53 53
62 Kazakhstan 27264 T 53 53
63 Kazakhstan 27265 T 53 53
64 Kazakhstan 27266 T 53 53
65 Kazakhstan 27267 T 53 53
66 Kazakhstan 27268 A 53 53
67 Kazakhstan 27269 A 53 53
68 Kazakhstan 27270 A 53 53
69 Kazakhstan 27271 G 53 53
70 Kazakhstan 27272 T 53 53
71 Kazakhstan 27273 T 53 53
72 Kazakhstan 27274 T 53 53
73 Kazakhstan 27275 C 53 53
74 Kazakhstan 27276 C 53 53
75 Kazakhstan 27277 A 53 53
76 Kazakhstan 27278 T 53 53
77 Kazakhstan 27279 T 53 53
78 Kazakhstan 27280 T 53 53
79 Kazakhstan 27281 G 53 53
80 Kazakhstan 27282 G 53 53
81 Kazakhstan 27283 A 53 53
82 Kazakhstan 27284 A 53 53
83 Kazakhstan 27285 T 53 53
84 Kazakhstan 27286 C 53 53
85 Kazakhstan 27287 T 53 53
86 Kazakhstan 27288 T 53 53
87 Kazakhstan 27289 G 53 53
88 Kazakhstan 27290 A 53 53
89 Kazakhstan 27291 T 53 53
90 Kazakhstan 27292 T 53 53
91 Kazakhstan 27293 A 53 53
92 Kazakhstan 27294 C 53 53
93 Kazakhstan 27295 A 53 53
94 Kazakhstan 27296 T 53 53
95 Kazakhstan 27297 C 53 53
96 Kazakhstan 27298 A 53 53
97 Kazakhstan 27299 T 53 53
98 Kazakhstan 27300 A 53 53
99 Kazakhstan 27301 A 53 53
100 Kazakhstan 27302 A 53 53
101 Kazakhstan 27303 C 53 53
102 Kazakhstan 27304 C 53 53
103 Kazakhstan 27305 T 53 53
104 Kazakhstan 27306 C 53 53
105 Kazakhstan 27307 A 53 53
106 Kazakhstan 27308 T 53 53
107 Kazakhstan 27309 A 53 53
108 Kazakhstan 27310 A 53 53
109 Kazakhstan 27311 T 53 53
110 Kazakhstan 27312 T 53 53
111 Kazakhstan 27313 A 53 53
112 Kazakhstan 27314 A 53 53
113 Kazakhstan 27315 A 53 53
114 Kazakhstan 27316 A 53 53
115 Kazakhstan 27317 A 53 53
116 Kazakhstan 27318 T 53 53
117 Kazakhstan 27319 T 53 53
118 Kazakhstan 27320 T 53 53
119 Kazakhstan 27321 A 53 53
120 Kazakhstan 27322 T 53 53
121 Kazakhstan 27323 C 53 53
122 Kazakhstan 27324 T 53 53
123 Kazakhstan 27325 A 53 53
124 Kazakhstan 27326 A 53 53
125 Kazakhstan 27327 G 53 53
126 Kazakhstan 27328 T 53 53
127 Kazakhstan 27329 C 53 53
128 Kazakhstan 27330 A 53 53
129 Kazakhstan 27331 C 53 53
130 Kazakhstan 27332 T 53 53
131 Kazakhstan 27333 A 53 53
132 Kazakhstan 27334 A 53 53
133 Kazakhstan 27335 C 53 53
134 Kazakhstan 27336 T 53 53
135 Kazakhstan 27337 G 53 53
136 Kazakhstan 27338 A 53 53
137 Kazakhstan 27339 G 53 53
138 Kazakhstan 27340 A 53 53
139 Kazakhstan 27341 A 53 53
140 Kazakhstan 27342 T 53 53
141 Kazakhstan 27343 A 53 53
142 Kazakhstan 27344 A 53 53
143 Kazakhstan 27345 A 53 53
144 Kazakhstan 27346 T 53 53
145 Kazakhstan 27347 A 53 53
146 Kazakhstan 27348 T 53 53
147 Kazakhstan 27349 T 53 53
148 Kazakhstan 27350 C 53 53
149 Kazakhstan 27351 T 53 53
150 Kazakhstan 27352 C 53 53
151 Kazakhstan 27353 A 53 53
152 Kazakhstan 27354 A 53 53
153 Kazakhstan 27355 T 53 53
154 Kazakhstan 27356 T 53 53
155 Kazakhstan 27357 A 53 53
156 Kazakhstan 27358 G 53 53
157 Kazakhstan 27359 A 53 53
158 Kazakhstan 27360 T 53 53
159 Kazakhstan 27361 G 53 53
160 Kazakhstan 27362 A 53 53
161 Kazakhstan 27363 A 53 53
162 Kazakhstan 27364 G 53 53
163 Kazakhstan 27365 A 53 53
164 Kazakhstan 27366 G 53 53
165 Kazakhstan 27367 C 53 53
166 Kazakhstan 27368 A 53 53
167 Kazakhstan 27369 A 53 53
168 Kazakhstan 27370 C 53 53
169 Kazakhstan 27371 C 53 53
170 Kazakhstan 27372 A 53 53
171 Kazakhstan 27373 A 53 53
172 Kazakhstan 27374 T 53 53
173 Kazakhstan 27375 G 53 53
174 Kazakhstan 27376 G 53 53
175 Kazakhstan 27377 A 53 53
176 Kazakhstan 27378 G 53 53
177 Kazakhstan 27379 A 53 53
178 Kazakhstan 27380 T 53 53
179 Kazakhstan 27381 T 53 53
180 Kazakhstan 27382 G 53 53
181 Kazakhstan 27383 A 53 53
182 Kazakhstan 27384 T 53 53
183 Kazakhstan 27385 T 53 53
184 Kazakhstan 27386 A 53 53
185 Kazakhstan 27387 A 53 53