National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12 1 1                               2
E     16                                    
F     9                                    
H     3               1                    
I     30           1                        
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jordan 27202 A 579 579
1 Jordan 27203 T 579 579
2 Jordan 27204 G 579 579
3 Jordan 27205 T 579 579
4 Jordan 27206 T 579 579
5 Jordan 27207 T 579 579
6 Jordan 27208 C 579 579
7 Jordan 27209 A T 579 577 His3Leu
8 Jordan 27210 T 579 579
9 Jordan 27211 C 579 579
10 Jordan 27212 T 579 579
11 Jordan 27213 C 579 579
12 Jordan 27214 G 579 579
13 Jordan 27215 T 579 579
14 Jordan 27216 T 579 579
15 Jordan 27217 G 579 579
16 Jordan 27218 A 579 579
17 Jordan 27219 C 579 579
18 Jordan 27220 T 579 579
19 Jordan 27221 T 579 579
20 Jordan 27222 T 579 579
21 Jordan 27223 C 579 579
22 Jordan 27224 A 579 579
23 Jordan 27225 G 579 579
24 Jordan 27226 G 579 579
25 Jordan 27227 T 579 579
26 Jordan 27228 T 579 579
27 Jordan 27229 A 579 579
28 Jordan 27230 C 579 579
29 Jordan 27231 T 579 579
30 Jordan 27232 A 579 579
31 Jordan 27233 T 579 579
32 Jordan 27234 A 579 579
33 Jordan 27235 G 579 579
34 Jordan 27236 C 579 579
35 Jordan 27237 A 579 579
36 Jordan 27238 G 579 579
37 Jordan 27239 A 579 579
38 Jordan 27240 G 579 579
39 Jordan 27241 A 579 579
40 Jordan 27242 T 579 579
41 Jordan 27243 A 579 579
42 Jordan 27244 T 579 579
43 Jordan 27245 T 579 579
44 Jordan 27246 A 579 579
45 Jordan 27247 C 579 579
46 Jordan 27248 T 579 579
47 Jordan 27249 A 579 579
48 Jordan 27250 A 579 579
49 Jordan 27251 T 579 579
50 Jordan 27252 T 579 579
51 Jordan 27253 A 579 579
52 Jordan 27254 T 579 579
53 Jordan 27255 T 579 579
54 Jordan 27256 A 579 579
55 Jordan 27257 T 579 578
56 Jordan 27258 G 579 578
57 Jordan 27259 A 579 578
58 Jordan 27260 G 578 577
59 Jordan 27261 G 578 577
60 Jordan 27262 A 578 577
61 Jordan 27263 C 578 578
62 Jordan 27264 T 578 578
63 Jordan 27265 T 578 578
64 Jordan 27266 T 578 578
65 Jordan 27267 T 578 578
66 Jordan 27268 A 578 578
67 Jordan 27269 A 578 578
68 Jordan 27270 A 578 578
69 Jordan 27271 G 578 578
70 Jordan 27272 T 578 578
71 Jordan 27273 T 578 578
72 Jordan 27274 T 578 578
73 Jordan 27275 C 578 578
74 Jordan 27276 C 578 578
75 Jordan 27277 A 578 578
76 Jordan 27278 T 578 578
77 Jordan 27279 T 578 578
78 Jordan 27280 T 578 578
79 Jordan 27281 G 578 578
80 Jordan 27282 G 578 578
81 Jordan 27283 A 578 578
82 Jordan 27284 A 578 578
83 Jordan 27285 T 578 578
84 Jordan 27286 C 578 578
85 Jordan 27287 T 578 578
86 Jordan 27288 T 578 578
87 Jordan 27289 G 578 578
88 Jordan 27290 A 578 578
89 Jordan 27291 T 578 578
90 Jordan 27292 T 578 578
91 Jordan 27293 A 578 578
92 Jordan 27294 C T 578 577 Tyr31Tyr
93 Jordan 27295 A 578 578
94 Jordan 27296 T 578 578
95 Jordan 27297 C 578 578
96 Jordan 27298 A 578 578
97 Jordan 27299 T 578 578
98 Jordan 27300 A C 578 577 Ile33Ile
99 Jordan 27301 A 578 578
100 Jordan 27302 A 578 578
101 Jordan 27303 C 578 578
102 Jordan 27304 C 578 578
103 Jordan 27305 T 578 578
104 Jordan 27306 C 578 578
105 Jordan 27307 A 578 578
106 Jordan 27308 T 578 578
107 Jordan 27309 A 578 578
108 Jordan 27310 A 578 578
109 Jordan 27311 T 578 578
110 Jordan 27312 T 578 578
111 Jordan 27313 A 578 578
112 Jordan 27314 A 578 578
113 Jordan 27315 A 578 578
114 Jordan 27316 A 578 578
115 Jordan 27317 A 578 578
116 Jordan 27318 T 578 578
117 Jordan 27319 T 578 578
118 Jordan 27320 T 578 578
119 Jordan 27321 A 578 578
120 Jordan 27322 T 578 578
121 Jordan 27323 C 578 578
122 Jordan 27324 T 578 578
123 Jordan 27325 A 578 578
124 Jordan 27326 A 578 578
125 Jordan 27327 G 578 578
126 Jordan 27328 T 578 578
127 Jordan 27329 C 578 578
128 Jordan 27330 A 578 578
129 Jordan 27331 C 578 578
130 Jordan 27332 T 578 578
131 Jordan 27333 A 578 578
132 Jordan 27334 A 578 578
133 Jordan 27335 C 578 578
134 Jordan 27336 T 578 578
135 Jordan 27337 G 578 578
136 Jordan 27338 A 578 578
137 Jordan 27339 G 578 578
138 Jordan 27340 A 578 578
139 Jordan 27341 A 578 578
140 Jordan 27342 T 578 578
141 Jordan 27343 A 578 578
142 Jordan 27344 A 578 578
143 Jordan 27345 A 578 578
144 Jordan 27346 T 578 578
145 Jordan 27347 A 578 578
146 Jordan 27348 T 578 578
147 Jordan 27349 T 578 578
148 Jordan 27350 C 578 578
149 Jordan 27351 T 578 578
150 Jordan 27352 C 578 578
151 Jordan 27353 A 578 578
152 Jordan 27354 A 578 578
153 Jordan 27355 T 578 578
154 Jordan 27356 T 578 578
155 Jordan 27357 A 578 578
156 Jordan 27358 G T 578 577 Asp53Tyr
157 Jordan 27359 A 578 578
158 Jordan 27360 T 578 578
159 Jordan 27361 G 578 578
160 Jordan 27362 A 578 578
161 Jordan 27363 A 578 578
162 Jordan 27364 G 578 578
163 Jordan 27365 A 578 578
164 Jordan 27366 G 578 578
165 Jordan 27367 C 578 578
166 Jordan 27368 A 578 578
167 Jordan 27369 A 578 578
168 Jordan 27370 C 578 578
169 Jordan 27371 C 578 578
170 Jordan 27372 A 578 578
171 Jordan 27373 A 578 578
172 Jordan 27374 T 578 578
173 Jordan 27375 G 578 578
174 Jordan 27376 G 578 578
175 Jordan 27377 A 578 578
176 Jordan 27378 G 578 578
177 Jordan 27379 A 578 578
178 Jordan 27380 T 578 578
179 Jordan 27381 T 578 578
180 Jordan 27382 G T 578 577 Asp61Tyr
181 Jordan 27383 A C 578 576 Asp61Ala
182 Jordan 27384 T C 578 576 Asp61Asp
183 Jordan 27385 T 578 578
184 Jordan 27386 A 578 578
185 Jordan 27387 A 578 578