National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F G H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
D     12   3       1                         2
E 1   16   2     1                            
F     9       2         1                    
G                                            
H     3                                      
I     30             2             1   4 3    
K     12               1     1                
L     24       2     1   5         1     1    
M     9                                 1    
N     12                                      
P     3                 1                    
Q 2   9     1                 1 1 1          
R     3                   1       1 1        
S     12                             1        
T     9             1                 1      
V     9       2     2                   1    
W 1   3                 1                    
Y     6           2                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Japan 27202 A 17025 17025
1 Japan 27203 T 17025 17025
2 Japan 27204 G 17030 17030
3 Japan 27205 T 17030 17030
4 Japan 27206 T 17030 17030
5 Japan 27207 T C 17030 17029 Phe2Phe
6 Japan 27208 C 17031 17031
7 Japan 27209 A 17031 17031
8 Japan 27210 T 17031 17031
9 Japan 27211 C 17031 17031
10 Japan 27212 T 17031 17031
11 Japan 27213 C T 17031 17007 Leu4Leu
12 Japan 27214 G T,A 17031 17026 Val5Phe-p.Val5Ile
13 Japan 27215 T 17031 17031
14 Japan 27216 T C 17031 17030 Val5Val
15 Japan 27217 G T 17031 17030 Asp6Tyr
16 Japan 27218 A 17031 17031
17 Japan 27219 C T 17031 17030 Asp6Asp
18 Japan 27220 T 17031 17031
19 Japan 27221 T 17031 17031
20 Japan 27222 T C 17031 17029 Phe7Phe
21 Japan 27223 C G,T 17031 17019 Gln8*-p.Gln8Glu
22 Japan 27224 A C,G 17031 17010 Gln8Pro-p.Gln8Arg
23 Japan 27225 G 17031 17031
24 Japan 27226 G T,A 17031 17027 Val9Phe-p.Val9Ile
25 Japan 27227 T 17031 17030
26 Japan 27228 T 17031 17030
27 Japan 27229 A 17031 17030
28 Japan 27230 C 17031 17030
29 Japan 27231 T C 17031 17030 Thr10Thr
30 Japan 27232 A 17031 17031
31 Japan 27233 T G 17031 17030 Ile11Arg
32 Japan 27234 A 17031 17031
33 Japan 27235 G 17031 17031
34 Japan 27236 C 17031 17031
35 Japan 27237 A 17031 17031
36 Japan 27238 G 17031 17030
37 Japan 27239 A 17031 17031
38 Japan 27240 G T 17031 17025 Glu13Asp
39 Japan 27241 A 17031 17031
40 Japan 27242 T C 17031 17030 Ile14Thr
41 Japan 27243 A 17031 17031
42 Japan 27244 T G,C 17031 17027 Leu15Val-p.Leu15Leu
43 Japan 27245 T 17031 17031
44 Japan 27246 A C 17031 17027 Leu15Phe
45 Japan 27247 C T 17031 17028 Leu16Leu
46 Japan 27248 T 17031 17031
47 Japan 27249 A 17031 17031
48 Japan 27250 A 17031 17031
49 Japan 27251 T 17031 17031
50 Japan 27252 T 17031 17031
51 Japan 27253 A G 17031 17030 Ile18Val
52 Japan 27254 T 17031 17031
53 Japan 27255 T 17031 17031
54 Japan 27256 A 17031 17031
55 Japan 27257 T 17031 17031
56 Japan 27258 G 17031 17031
57 Japan 27259 A 17031 17031
58 Japan 27260 G T 17031 17030 Arg20Met
59 Japan 27261 G T,A 17031 17017 Arg20Ser-p.Arg20Arg
60 Japan 27262 A 17030 17030
61 Japan 27263 C T 17030 17028 Thr21Ile
62 Japan 27264 T 17030 17030
63 Japan 27265 T C 17030 17029 Phe22Leu
64 Japan 27266 T 17030 17030
65 Japan 27267 T 17030 17030
66 Japan 27268 A 17030 17030
67 Japan 27269 A 17030 17030
68 Japan 27270 A G 17030 17028 Lys23Lys
69 Japan 27271 G 17030 17030
70 Japan 27272 T 17030 17030
71 Japan 27273 T 17030 17030
72 Japan 27274 T 17030 17030
73 Japan 27275 C 17030 17030
74 Japan 27276 C 17030 17030
75 Japan 27277 A 17030 17030
76 Japan 27278 T C 17030 17029 Ile26Thr
77 Japan 27279 T C 17030 17029 Ile26Ile
78 Japan 27280 T 17030 17030
79 Japan 27281 G T 17030 17028 Trp27Leu
80 Japan 27282 G A 17030 17029 Trp27*
81 Japan 27283 A 17030 17030
82 Japan 27284 A 17030 17030
83 Japan 27285 T 17030 17030
84 Japan 27286 C T 17030 17029 Leu29Phe
85 Japan 27287 T 17030 17030
86 Japan 27288 T 17029 17029
87 Japan 27289 G 17029 17029
88 Japan 27290 A 17029 17029
89 Japan 27291 T 17029 17029
90 Japan 27292 T C 17029 17025 Tyr31His
91 Japan 27293 A 17029 17029
92 Japan 27294 C T 17029 17004 Tyr31Tyr
93 Japan 27295 A G 17029 17027 Ile32Val
94 Japan 27296 T C 17029 17021 Ile32Thr
95 Japan 27297 C T 17029 17001 Ile32Ile
96 Japan 27298 A 17029 17029
97 Japan 27299 T C 17029 17022 Ile33Thr
98 Japan 27300 A 17029 17029
99 Japan 27301 A 17029 17029
100 Japan 27302 A 17029 17029
101 Japan 27303 C 17029 17029
102 Japan 27304 C 17029 17029
103 Japan 27305 T G 17029 17028 Leu35Arg
104 Japan 27306 C T 17029 17028 Leu35Leu
105 Japan 27307 A 17029 17029
106 Japan 27308 T 17029 17029
107 Japan 27309 A 17029 17029
108 Japan 27310 A 17029 17029
109 Japan 27311 T 17029 17029
110 Japan 27312 T 17030 17030
111 Japan 27313 A 17030 17026
112 Japan 27314 A 17030 17030
113 Japan 27315 A 17030 17030
114 Japan 27316 A 17030 17030
115 Japan 27317 A 17030 17030
116 Japan 27318 T 17030 17030
117 Japan 27319 T 17030 17030
118 Japan 27320 T 17030 17030
119 Japan 27321 A 17030 17030
120 Japan 27322 T 17031 17031
121 Japan 27323 C 17031 17031
122 Japan 27324 T 17031 17031
123 Japan 27325 A 17031 17030
124 Japan 27326 A 17031 17030
125 Japan 27327 G T 17031 17029 Lys42Asn
126 Japan 27328 T 17031 17030
127 Japan 27329 C 17031 17030
128 Japan 27330 A 17031 17030
129 Japan 27331 C T,A 17031 17023 Leu44Ile-p.Leu44Leu
130 Japan 27332 T 17031 17030
131 Japan 27333 A 17031 17030
132 Japan 27334 A 17031 17030
133 Japan 27335 C 17031 17030
134 Japan 27336 T 17031 17031
135 Japan 27337 G 17031 17031
136 Japan 27338 A 17031 17030
137 Japan 27339 G 17031 17031
138 Japan 27340 A 17031 17031
139 Japan 27341 A 17031 17031
140 Japan 27342 T 17031 17031
141 Japan 27343 A 17031 17031
142 Japan 27344 A 17031 17031
143 Japan 27345 A 17031 17031
144 Japan 27346 T C 17031 17029 Tyr49His
145 Japan 27347 A 17031 17031
146 Japan 27348 T 17031 17031
147 Japan 27349 T 17031 17031
148 Japan 27350 C 17031 17031
149 Japan 27351 T G 17031 17029 Ser50Ser
150 Japan 27352 C 17031 17031
151 Japan 27353 A 17031 17031
152 Japan 27354 A G 17031 17030 Gln51Gln
153 Japan 27355 T 17031 17031
154 Japan 27356 T 17031 17031
155 Japan 27357 A 17031 17031
156 Japan 27358 G 17031 17031
157 Japan 27359 A 17031 17031
158 Japan 27360 T C 17031 17029 Asp53Asp
159 Japan 27361 G 17031 17031
160 Japan 27362 A G 17031 17029 Glu54Gly
161 Japan 27363 A 17031 17031
162 Japan 27364 G T 17031 17026 Glu55*
163 Japan 27365 A 17031 17031
164 Japan 27366 G T 17031 17030 Glu55Asp
165 Japan 27367 C T 17031 17028 Gln56*
166 Japan 27368 A 17031 17031
167 Japan 27369 A 17031 17031
168 Japan 27370 C 17031 17031
169 Japan 27371 C T 17031 17024 Pro57Leu
170 Japan 27372 A 17031 17031
171 Japan 27373 A G 17031 17029 Met58Val
172 Japan 27374 T 17031 17031
173 Japan 27375 G 17031 17031
174 Japan 27376 G 17031 17031
175 Japan 27377 A 17031 17031
176 Japan 27378 G 17031 17031
177 Japan 27379 A G 17031 17030 Ile60Val
178 Japan 27380 T 17031 17031
179 Japan 27381 T 17031 17031
180 Japan 27382 G C,T 17022 17014 Asp61His-p.Asp61Tyr
181 Japan 27383 A 17022 17022
182 Japan 27384 T C 17021 16934 Asp61Asp
183 Japan 27385 T 17021 17021
184 Japan 27386 A 17021 17021
185 Japan 27387 A 17021 17021