National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24               1                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jamaica 27202 A 12 12
1 Jamaica 27203 T 12 12
2 Jamaica 27204 G 12 12
3 Jamaica 27205 T 12 12
4 Jamaica 27206 T 12 12
5 Jamaica 27207 T 12 12
6 Jamaica 27208 C 12 12
7 Jamaica 27209 A 12 12
8 Jamaica 27210 T 12 12
9 Jamaica 27211 C 12 12
10 Jamaica 27212 T 12 12
11 Jamaica 27213 C T 12 11 Leu4Leu
12 Jamaica 27214 G 12 12
13 Jamaica 27215 T 12 12
14 Jamaica 27216 T 12 12
15 Jamaica 27217 G 12 12
16 Jamaica 27218 A 12 12
17 Jamaica 27219 C 12 12
18 Jamaica 27220 T 12 12
19 Jamaica 27221 T 12 12
20 Jamaica 27222 T 12 12
21 Jamaica 27223 C 12 12
22 Jamaica 27224 A 12 12
23 Jamaica 27225 G 12 12
24 Jamaica 27226 G 12 12
25 Jamaica 27227 T 12 12
26 Jamaica 27228 T 12 12
27 Jamaica 27229 A 12 12
28 Jamaica 27230 C 12 12
29 Jamaica 27231 T 12 12
30 Jamaica 27232 A 12 12
31 Jamaica 27233 T 12 12
32 Jamaica 27234 A 12 12
33 Jamaica 27235 G 12 12
34 Jamaica 27236 C 12 12
35 Jamaica 27237 A 12 12
36 Jamaica 27238 G 12 12
37 Jamaica 27239 A 12 12
38 Jamaica 27240 G 12 12
39 Jamaica 27241 A 12 12
40 Jamaica 27242 T 12 12
41 Jamaica 27243 A 12 12
42 Jamaica 27244 T 12 12
43 Jamaica 27245 T 12 12
44 Jamaica 27246 A 12 12
45 Jamaica 27247 C 12 12
46 Jamaica 27248 T 12 12
47 Jamaica 27249 A 12 12
48 Jamaica 27250 A 12 12
49 Jamaica 27251 T 12 12
50 Jamaica 27252 T 12 12
51 Jamaica 27253 A 12 12
52 Jamaica 27254 T 12 12
53 Jamaica 27255 T 12 12
54 Jamaica 27256 A 12 12
55 Jamaica 27257 T 12 12
56 Jamaica 27258 G 12 12
57 Jamaica 27259 A 12 12
58 Jamaica 27260 G 12 12
59 Jamaica 27261 G 12 12
60 Jamaica 27262 A 12 12
61 Jamaica 27263 C 12 12
62 Jamaica 27264 T 12 12
63 Jamaica 27265 T 12 12
64 Jamaica 27266 T 12 12
65 Jamaica 27267 T 12 12
66 Jamaica 27268 A 12 12
67 Jamaica 27269 A 12 12
68 Jamaica 27270 A 12 12
69 Jamaica 27271 G 12 12
70 Jamaica 27272 T 12 12
71 Jamaica 27273 T 12 12
72 Jamaica 27274 T 12 12
73 Jamaica 27275 C 12 12
74 Jamaica 27276 C 12 12
75 Jamaica 27277 A 12 12
76 Jamaica 27278 T 12 12
77 Jamaica 27279 T 12 12
78 Jamaica 27280 T 12 12
79 Jamaica 27281 G 12 12
80 Jamaica 27282 G 12 12
81 Jamaica 27283 A 12 12
82 Jamaica 27284 A 12 12
83 Jamaica 27285 T 12 12
84 Jamaica 27286 C 12 12
85 Jamaica 27287 T 12 12
86 Jamaica 27288 T 12 12
87 Jamaica 27289 G 12 12
88 Jamaica 27290 A 12 12
89 Jamaica 27291 T 12 12
90 Jamaica 27292 T 12 12
91 Jamaica 27293 A 12 12
92 Jamaica 27294 C 12 12
93 Jamaica 27295 A 12 12
94 Jamaica 27296 T 12 12
95 Jamaica 27297 C 12 12
96 Jamaica 27298 A 12 12
97 Jamaica 27299 T 12 12
98 Jamaica 27300 A 12 12
99 Jamaica 27301 A 12 12
100 Jamaica 27302 A 12 12
101 Jamaica 27303 C 12 12
102 Jamaica 27304 C 12 12
103 Jamaica 27305 T 12 12
104 Jamaica 27306 C 12 12
105 Jamaica 27307 A 12 12
106 Jamaica 27308 T 12 12
107 Jamaica 27309 A 12 12
108 Jamaica 27310 A 12 12
109 Jamaica 27311 T 12 12
110 Jamaica 27312 T 12 12
111 Jamaica 27313 A 12 12
112 Jamaica 27314 A 12 12
113 Jamaica 27315 A 12 12
114 Jamaica 27316 A 12 12
115 Jamaica 27317 A 12 12
116 Jamaica 27318 T 12 12
117 Jamaica 27319 T 12 12
118 Jamaica 27320 T 12 12
119 Jamaica 27321 A 12 12
120 Jamaica 27322 T 12 12
121 Jamaica 27323 C 12 12
122 Jamaica 27324 T 12 12
123 Jamaica 27325 A 12 12
124 Jamaica 27326 A 12 12
125 Jamaica 27327 G 12 12
126 Jamaica 27328 T 12 12
127 Jamaica 27329 C 12 12
128 Jamaica 27330 A 12 12
129 Jamaica 27331 C 12 12
130 Jamaica 27332 T 12 12
131 Jamaica 27333 A 12 12
132 Jamaica 27334 A 12 12
133 Jamaica 27335 C 12 12
134 Jamaica 27336 T 12 12
135 Jamaica 27337 G 12 12
136 Jamaica 27338 A 12 12
137 Jamaica 27339 G 12 12
138 Jamaica 27340 A 12 12
139 Jamaica 27341 A 12 12
140 Jamaica 27342 T 12 12
141 Jamaica 27343 A 12 12
142 Jamaica 27344 A 12 12
143 Jamaica 27345 A 12 12
144 Jamaica 27346 T 12 12
145 Jamaica 27347 A 12 12
146 Jamaica 27348 T 12 12
147 Jamaica 27349 T 12 12
148 Jamaica 27350 C 12 12
149 Jamaica 27351 T 12 12
150 Jamaica 27352 C 12 12
151 Jamaica 27353 A 12 12
152 Jamaica 27354 A 12 12
153 Jamaica 27355 T 12 12
154 Jamaica 27356 T 12 12
155 Jamaica 27357 A 12 12
156 Jamaica 27358 G 12 12
157 Jamaica 27359 A 12 12
158 Jamaica 27360 T 12 12
159 Jamaica 27361 G 12 12
160 Jamaica 27362 A 12 12
161 Jamaica 27363 A 12 12
162 Jamaica 27364 G 12 12
163 Jamaica 27365 A 12 12
164 Jamaica 27366 G 12 12
165 Jamaica 27367 C 12 12
166 Jamaica 27368 A 12 12
167 Jamaica 27369 A 12 12
168 Jamaica 27370 C 12 12
169 Jamaica 27371 C 12 12
170 Jamaica 27372 A 12 12
171 Jamaica 27373 A 12 12
172 Jamaica 27374 T 12 12
173 Jamaica 27375 G 12 12
174 Jamaica 27376 G 12 12
175 Jamaica 27377 A 12 12
176 Jamaica 27378 G 12 12
177 Jamaica 27379 A 12 12
178 Jamaica 27380 T 12 12
179 Jamaica 27381 T 12 12
180 Jamaica 27382 G 12 12
181 Jamaica 27383 A 12 12
182 Jamaica 27384 T 12 12
183 Jamaica 27385 T 12 12
184 Jamaica 27386 A 12 12
185 Jamaica 27387 A 12 12