National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
C                                            
D     12     1     1                     1   2
E 2   16     1                                
F     9                 1                    
H     3           1                          
I     30             1                 2 1    
K     12                                      
L     24                 3                    
M     9             1                        
N     12                     1                
P     3                                      
Q 1   9                                      
R     3               1             1        
S     12         1                   1        
T     9                       1       1      
V     9                                      
W     3                 1         1          
Y     6   1       1                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 27202 A 2958 2958
1 Italy 27203 T 2958 2958
2 Italy 27204 G T 2958 2956 Met1?
3 Italy 27205 T C 2958 2951 Phe2Leu
4 Italy 27206 T 2958 2958
5 Italy 27207 T 2958 2958
6 Italy 27208 C 2958 2957
7 Italy 27209 A 2958 2958
8 Italy 27210 T C 2958 2955 His3His
9 Italy 27211 C 2958 2958
10 Italy 27212 T 2958 2958
11 Italy 27213 C T 2958 2917 Leu4Leu
12 Italy 27214 G 2958 2958
13 Italy 27215 T 2958 2958
14 Italy 27216 T 2958 2958
15 Italy 27217 G T 2961 2960 Asp6Tyr
16 Italy 27218 A 2961 2961
17 Italy 27219 C 2961 2961
18 Italy 27220 T 2962 2962
19 Italy 27221 T 2962 2962
20 Italy 27222 T 2962 2962
21 Italy 27223 C 2962 2962
22 Italy 27224 A 2962 2962
23 Italy 27225 G 2962 2962
24 Italy 27226 G 2962 2962
25 Italy 27227 T 2962 2962
26 Italy 27228 T 2962 2962
27 Italy 27229 A 2962 2962
28 Italy 27230 C 2962 2962
29 Italy 27231 T C 2962 2961 Thr10Thr
30 Italy 27232 A 2962 2962
31 Italy 27233 T 2962 2962
32 Italy 27234 A 2962 2962
33 Italy 27235 G 2962 2962
34 Italy 27236 C 2962 2962
35 Italy 27237 A 2962 2962
36 Italy 27238 G 2962 2962
37 Italy 27239 A 2962 2962
38 Italy 27240 G 2962 2962
39 Italy 27241 A 2962 2962
40 Italy 27242 T 2962 2962
41 Italy 27243 A 2962 2962
42 Italy 27244 T C 2962 2961 Leu15Leu
43 Italy 27245 T 2962 2962
44 Italy 27246 A 2962 2962
45 Italy 27247 C 2962 2962
46 Italy 27248 T 2962 2962
47 Italy 27249 A 2960 2960
48 Italy 27250 A 2959 2959
49 Italy 27251 T 2958 2958
50 Italy 27252 T 2958 2958
51 Italy 27253 A 2958 2958
52 Italy 27254 T 2958 2958
53 Italy 27255 T 2958 2958
54 Italy 27256 A 2958 2958
55 Italy 27257 T 2958 2956
56 Italy 27258 G 2958 2956
57 Italy 27259 A 2957 2957
58 Italy 27260 G A 2957 2954 Arg20Lys
59 Italy 27261 G T 2957 2956 Arg20Ser
60 Italy 27262 A C 2957 2956 Thr21Pro
61 Italy 27263 C 2957 2957
62 Italy 27264 T 2957 2957
63 Italy 27265 T 2957 2957
64 Italy 27266 T 2957 2957
65 Italy 27267 T 2957 2957
66 Italy 27268 A 2957 2957
67 Italy 27269 A 2957 2957
68 Italy 27270 A 2957 2957
69 Italy 27271 G 2957 2957
70 Italy 27272 T 2957 2955
71 Italy 27273 T 2957 2957
72 Italy 27274 T 2957 2957
73 Italy 27275 C 2957 2957
74 Italy 27276 C T 2957 2956 Ser25Ser
75 Italy 27277 A 2957 2957
76 Italy 27278 T 2957 2957
77 Italy 27279 T 2957 2956
78 Italy 27280 T C 2957 2956 Trp27Arg
79 Italy 27281 G T 2957 2955 Trp27Leu
80 Italy 27282 G 2957 2957
81 Italy 27283 A 2957 2957
82 Italy 27284 A 2957 2957
83 Italy 27285 T 2957 2957
84 Italy 27286 C 2957 2957
85 Italy 27287 T 2957 2957
86 Italy 27288 T 2957 2957
87 Italy 27289 G C 2957 2954 Asp30His
88 Italy 27290 A 2957 2957
89 Italy 27291 T 2957 2957
90 Italy 27292 T 2957 2957
91 Italy 27293 A G 2957 2956 Tyr31Cys
92 Italy 27294 C 2957 2957
93 Italy 27295 A 2957 2957
94 Italy 27296 T 2958 2958
95 Italy 27297 C T 2958 2957 Ile32Ile
96 Italy 27298 A 2958 2958
97 Italy 27299 T C 2958 2957 Ile33Thr
98 Italy 27300 A 2958 2958
99 Italy 27301 A 2958 2958
100 Italy 27302 A 2958 2958
101 Italy 27303 C 2958 2958
102 Italy 27304 C 2958 2958
103 Italy 27305 T 2958 2957
104 Italy 27306 C 2958 2957
105 Italy 27307 A G 2958 2956 Ile36Val
106 Italy 27308 T 2958 2957
107 Italy 27309 A 2958 2957
108 Italy 27310 A 2958 2957
109 Italy 27311 T 2958 2957
110 Italy 27312 T 2958 2957
111 Italy 27313 A 2958 2957
112 Italy 27314 A 2958 2957
113 Italy 27315 A 2958 2957
114 Italy 27316 A 2958 2957
115 Italy 27317 A 2958 2957
116 Italy 27318 T 2958 2957
117 Italy 27319 T C 2958 2953 Leu40Leu
118 Italy 27320 T 2958 2957
119 Italy 27321 A 2958 2957
120 Italy 27322 T 2958 2957
121 Italy 27323 C T 2958 2956 Ser41Phe
122 Italy 27324 T 2958 2957
123 Italy 27325 A 2958 2955
124 Italy 27326 A 2958 2957
125 Italy 27327 G 2958 2957
126 Italy 27328 T 2958 2957
127 Italy 27329 C 2957 2956
128 Italy 27330 A 2957 2957
129 Italy 27331 C 2957 2957
130 Italy 27332 T 2957 2957
131 Italy 27333 A 2957 2957
132 Italy 27334 A 2957 2957
133 Italy 27335 C 2957 2955
134 Italy 27336 T 2957 2957
135 Italy 27337 G 2957 2957
136 Italy 27338 A 2957 2957
137 Italy 27339 G 2957 2957
138 Italy 27340 A 2957 2957
139 Italy 27341 A 2957 2957
140 Italy 27342 T C 2957 2956 Asn47Asn
141 Italy 27343 A 2957 2957
142 Italy 27344 A 2957 2957
143 Italy 27345 A 2957 2957
144 Italy 27346 T C 2957 2956 Tyr49His
145 Italy 27347 A 2957 2957
146 Italy 27348 T 2957 2957
147 Italy 27349 T 2957 2957
148 Italy 27350 C 2957 2957
149 Italy 27351 T 2957 2956
150 Italy 27352 C 2957 2957
151 Italy 27353 A 2957 2957
152 Italy 27354 A 2957 2957
153 Italy 27355 T 2957 2957
154 Italy 27356 T 2957 2957
155 Italy 27357 A 2957 2957
156 Italy 27358 G 2957 2957
157 Italy 27359 A 2957 2957
158 Italy 27360 T 2957 2957
159 Italy 27361 G 2957 2957
160 Italy 27362 A 2957 2957
161 Italy 27363 A 2957 2957
162 Italy 27364 G T 2957 2956 Glu55*
163 Italy 27365 A 2952 2952
164 Italy 27366 G 2951 2951
165 Italy 27367 C T 2951 2949 Gln56*
166 Italy 27368 A 2951 2951
167 Italy 27369 A 2951 2951
168 Italy 27370 C 2951 2951
169 Italy 27371 C 2951 2951
170 Italy 27372 A 2951 2951
171 Italy 27373 A 2951 2951
172 Italy 27374 T 2951 2950
173 Italy 27375 G 2951 2950
174 Italy 27376 G T 2951 2949 Glu59*
175 Italy 27377 A 2950 2949
176 Italy 27378 G T 2950 2948 Glu59Asp
177 Italy 27379 A 2950 2949
178 Italy 27380 T C 2950 2949 Ile60Thr
179 Italy 27381 T 2950 2950
180 Italy 27382 G T 2949 2948 Asp61Tyr
181 Italy 27383 A T 2948 2947 Asp61Val
182 Italy 27384 T C 2948 2945 Asp61Asp
183 Italy 27385 T 2948 2948
184 Italy 27386 A 2948 2948
185 Italy 27387 A 2948 2948