National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1                                
E     16   1                                
F     9               1                    
H     3   1     1                         1
I     30                             1 1    
K     12                                    
L     24       1                            
M     9                                    
N     12                                    
P     3               1                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9       1                            
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 27202 A 1401 1401
1 Ireland 27203 T 1401 1401
2 Ireland 27204 G 1401 1401
3 Ireland 27205 T 1401 1401
4 Ireland 27206 T 1404 1404
5 Ireland 27207 T A 1404 1403 Phe2Leu
6 Ireland 27208 C G,T 1404 1398 His3Asp-p.His3Tyr
7 Ireland 27209 A 1404 1404
8 Ireland 27210 T C 1404 1403 His3His
9 Ireland 27211 C 1404 1404
10 Ireland 27212 T 1404 1404
11 Ireland 27213 C 1404 1404
12 Ireland 27214 G T 1404 1401 Val5Phe
13 Ireland 27215 T 1404 1404
14 Ireland 27216 T 1404 1404
15 Ireland 27217 G 1404 1404
16 Ireland 27218 A 1404 1404
17 Ireland 27219 C 1404 1404
18 Ireland 27220 T 1404 1404
19 Ireland 27221 T 1404 1404
20 Ireland 27222 T 1404 1404
21 Ireland 27223 C 1404 1404
22 Ireland 27224 A 1404 1404
23 Ireland 27225 G 1404 1404
24 Ireland 27226 G 1404 1404
25 Ireland 27227 T 1404 1404
26 Ireland 27228 T 1404 1404
27 Ireland 27229 A 1405 1405
28 Ireland 27230 C 1405 1405
29 Ireland 27231 T 1405 1405
30 Ireland 27232 A 1405 1405
31 Ireland 27233 T 1405 1405
32 Ireland 27234 A 1405 1405
33 Ireland 27235 G 1405 1405
34 Ireland 27236 C 1405 1405
35 Ireland 27237 A 1405 1405
36 Ireland 27238 G 1405 1405
37 Ireland 27239 A 1405 1405
38 Ireland 27240 G T 1405 1403 Glu13Asp
39 Ireland 27241 A 1405 1405
40 Ireland 27242 T 1405 1405
41 Ireland 27243 A 1405 1405
42 Ireland 27244 T 1405 1405
43 Ireland 27245 T 1405 1405
44 Ireland 27246 A 1405 1405
45 Ireland 27247 C 1405 1405
46 Ireland 27248 T 1405 1405
47 Ireland 27249 A 1405 1405
48 Ireland 27250 A 1405 1405
49 Ireland 27251 T 1405 1405
50 Ireland 27252 T 1405 1405
51 Ireland 27253 A 1405 1405
52 Ireland 27254 T 1405 1405
53 Ireland 27255 T 1405 1405
54 Ireland 27256 A 1405 1405
55 Ireland 27257 T 1405 1405
56 Ireland 27258 G 1405 1405
57 Ireland 27259 A 1405 1405
58 Ireland 27260 G 1405 1405
59 Ireland 27261 G 1405 1405
60 Ireland 27262 A 1405 1405
61 Ireland 27263 C 1405 1405
62 Ireland 27264 T 1405 1405
63 Ireland 27265 T 1405 1405
64 Ireland 27266 T 1405 1405
65 Ireland 27267 T 1405 1405
66 Ireland 27268 A 1405 1405
67 Ireland 27269 A 1405 1405
68 Ireland 27270 A 1405 1405
69 Ireland 27271 G 1405 1405
70 Ireland 27272 T 1405 1405
71 Ireland 27273 T 1405 1405
72 Ireland 27274 T 1405 1405
73 Ireland 27275 C 1405 1405
74 Ireland 27276 C 1405 1405
75 Ireland 27277 A 1405 1405
76 Ireland 27278 T 1405 1405
77 Ireland 27279 T 1405 1405
78 Ireland 27280 T 1405 1405
79 Ireland 27281 G 1405 1405
80 Ireland 27282 G 1405 1405
81 Ireland 27283 A 1405 1405
82 Ireland 27284 A 1405 1405
83 Ireland 27285 T 1405 1405
84 Ireland 27286 C 1405 1405
85 Ireland 27287 T 1405 1405
86 Ireland 27288 T 1405 1405
87 Ireland 27289 G 1405 1405
88 Ireland 27290 A 1405 1405
89 Ireland 27291 T 1405 1405
90 Ireland 27292 T 1405 1405
91 Ireland 27293 A 1405 1405
92 Ireland 27294 C 1405 1405
93 Ireland 27295 A 1405 1405
94 Ireland 27296 T 1405 1405
95 Ireland 27297 C 1405 1405
96 Ireland 27298 A 1405 1405
97 Ireland 27299 T C 1405 1403 Ile33Thr
98 Ireland 27300 A 1405 1405
99 Ireland 27301 A 1405 1405
100 Ireland 27302 A 1405 1405
101 Ireland 27303 C 1405 1405
102 Ireland 27304 C 1405 1405
103 Ireland 27305 T 1405 1405
104 Ireland 27306 C 1407 1407
105 Ireland 27307 A 1407 1407
106 Ireland 27308 T 1407 1407
107 Ireland 27309 A 1407 1407
108 Ireland 27310 A 1407 1407
109 Ireland 27311 T 1407 1407
110 Ireland 27312 T 1407 1407
111 Ireland 27313 A 1407 1407
112 Ireland 27314 A 1407 1407
113 Ireland 27315 A 1407 1407
114 Ireland 27316 A 1407 1407
115 Ireland 27317 A 1407 1407
116 Ireland 27318 T 1407 1407
117 Ireland 27319 T 1407 1407
118 Ireland 27320 T 1407 1407
119 Ireland 27321 A T 1407 1406 Leu40Phe
120 Ireland 27322 T 1407 1407
121 Ireland 27323 C 1407 1407
122 Ireland 27324 T 1407 1407
123 Ireland 27325 A 1407 1407
124 Ireland 27326 A 1407 1407
125 Ireland 27327 G 1407 1407
126 Ireland 27328 T 1407 1407
127 Ireland 27329 C 1407 1407
128 Ireland 27330 A 1407 1407
129 Ireland 27331 C 1407 1407
130 Ireland 27332 T 1407 1407
131 Ireland 27333 A 1407 1407
132 Ireland 27334 A 1407 1407
133 Ireland 27335 C 1407 1407
134 Ireland 27336 T 1407 1407
135 Ireland 27337 G 1407 1407
136 Ireland 27338 A 1407 1407
137 Ireland 27339 G 1407 1407
138 Ireland 27340 A 1407 1407
139 Ireland 27341 A 1407 1407
140 Ireland 27342 T 1407 1407
141 Ireland 27343 A 1407 1407
142 Ireland 27344 A 1407 1407
143 Ireland 27345 A 1407 1407
144 Ireland 27346 T 1407 1407
145 Ireland 27347 A 1407 1407
146 Ireland 27348 T 1407 1407
147 Ireland 27349 T 1407 1407
148 Ireland 27350 C 1407 1407
149 Ireland 27351 T 1407 1407
150 Ireland 27352 C 1407 1407
151 Ireland 27353 A 1407 1407
152 Ireland 27354 A 1407 1407
153 Ireland 27355 T 1407 1407
154 Ireland 27356 T 1407 1407
155 Ireland 27357 A 1407 1407
156 Ireland 27358 G 1407 1407
157 Ireland 27359 A 1407 1407
158 Ireland 27360 T 1407 1407
159 Ireland 27361 G 1407 1407
160 Ireland 27362 A 1407 1407
161 Ireland 27363 A 1407 1407
162 Ireland 27364 G 1407 1407
163 Ireland 27365 A 1407 1407
164 Ireland 27366 G 1407 1407
165 Ireland 27367 C 1407 1407
166 Ireland 27368 A 1407 1407
167 Ireland 27369 A 1407 1407
168 Ireland 27370 C 1407 1407
169 Ireland 27371 C T 1407 1405 Pro57Leu
170 Ireland 27372 A 1407 1407
171 Ireland 27373 A 1407 1407
172 Ireland 27374 T 1407 1407
173 Ireland 27375 G 1407 1407
174 Ireland 27376 G 1407 1407
175 Ireland 27377 A 1407 1407
176 Ireland 27378 G 1407 1407
177 Ireland 27379 A G 1407 1406 Ile60Val
178 Ireland 27380 T 1407 1407
179 Ireland 27381 T 1407 1407
180 Ireland 27382 G 1406 1405
181 Ireland 27383 A 1406 1406
182 Ireland 27384 T C 1406 1404 Asp61Asp
183 Ireland 27385 T 1406 1406
184 Ireland 27386 A 1406 1406
185 Ireland 27387 A 1406 1406