National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F G H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
D     12   2     2 1                         4
E 2   16   2     1               1            
F     9       2     1               2        
G                                            
H     3                 1                   1
I     30             2   1           1 1 3    
K     12                     1     1          
L     24                 4                    
M     9             2                        
N     12                             1        
P     3                 1                    
Q     9           1                          
R     3                           1 1        
S     12                       1     1       1
T     9 1                           1 1      
V     9       2     1                   2    
W     3                 1                    
Y     6           1                         2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 27202 A 4744 4744
1 India 27203 T 4744 4744
2 India 27204 G T 4744 4742 Met1?
3 India 27205 T 4744 4744
4 India 27206 T C 4744 4741 Phe2Ser
5 India 27207 T C 4744 4743 Phe2Phe
6 India 27208 C T 4744 4742 His3Tyr
7 India 27209 A T 4744 4743 His3Leu
8 India 27210 T 4744 4744
9 India 27211 C 4744 4743
10 India 27212 T 4744 4742
11 India 27213 C T 4744 4719 Leu4Leu
12 India 27214 G A,T 4744 4738 Val5Ile-p.Val5Phe
13 India 27215 T 4744 4742
14 India 27216 T 4745 4744
15 India 27217 G T 4747 4745 Asp6Tyr
16 India 27218 A G 4747 4745 Asp6Gly
17 India 27219 C T 4747 4746 Asp6Asp
18 India 27220 T A 4747 4746 Phe7Ile
19 India 27221 T C 4747 4746 Phe7Ser
20 India 27222 T C 4747 4741 Phe7Phe
21 India 27223 C 4747 4746
22 India 27224 A 4747 4747
23 India 27225 G T 4747 4745 Gln8His
24 India 27226 G T 4747 4746 Val9Phe
25 India 27227 T 4748 4748
26 India 27228 T 4748 4748
27 India 27229 A 4748 4748
28 India 27230 C 4748 4747
29 India 27231 T C 4748 4746 Thr10Thr
30 India 27232 A 4748 4748
31 India 27233 T 4748 4748
32 India 27234 A 4748 4746
33 India 27235 G 4748 4746
34 India 27236 C 4748 4747
35 India 27237 A 4748 4747
36 India 27238 G 4748 4747
37 India 27239 A G 4748 4744 Glu13Gly
38 India 27240 G T 4748 4741 Glu13Asp
39 India 27241 A 4748 4746
40 India 27242 T 4748 4746
41 India 27243 A 4748 4747
42 India 27244 T 4748 4747
43 India 27245 T 4748 4747
44 India 27246 A 4748 4747
45 India 27247 C T 4749 4744 Leu16Leu
46 India 27248 T 4749 4748
47 India 27249 A 4749 4747
48 India 27250 A 4749 4747
49 India 27251 T 4749 4747
50 India 27252 T 4749 4747
51 India 27253 A 4749 4745
52 India 27254 T G 4749 4744 Ile18Ser
53 India 27255 T 4749 4745
54 India 27256 A 4749 4745
55 India 27257 T 4749 4745
56 India 27258 G 4749 4747
57 India 27259 A 4749 4746
58 India 27260 G 4750 4747
59 India 27261 G T,A 4750 4744 Arg20Ser-p.Arg20Arg
60 India 27262 A T,G 4749 4747 Thr21Ser-p.Thr21Ala
61 India 27263 C 4749 4748
62 India 27264 T 4749 4748
63 India 27265 T 4750 4749
64 India 27266 T 4750 4744
65 India 27267 T 4750 4749
66 India 27268 A 4750 4748
67 India 27269 A 4750 4748
68 India 27270 A 4750 4748
69 India 27271 G 4750 4748
70 India 27272 T 4750 4748
71 India 27273 T G,C 4750 4746 Val24Val-p.Val24Val
72 India 27274 T 4750 4748
73 India 27275 C A 4750 4747 Ser25Tyr
74 India 27276 C 4750 4748
75 India 27277 A G 4750 4745 Ile26Val
76 India 27278 T 4750 4747
77 India 27279 T 4750 4748
78 India 27280 T 4750 4748
79 India 27281 G T 4749 4746 Trp27Leu
80 India 27282 G 4749 4747
81 India 27283 A 4749 4747
82 India 27284 A 4749 4747
83 India 27285 T 4749 4747
84 India 27286 C 4750 4748
85 India 27287 T 4750 4748
86 India 27288 T 4750 4747
87 India 27289 G T 4750 4746 Asp30Tyr
88 India 27290 A 4750 4746
89 India 27291 T 4750 4747
90 India 27292 T 4750 4747
91 India 27293 A 4750 4747
92 India 27294 C T 4750 4742 Tyr31Tyr
93 India 27295 A 4750 4746
94 India 27296 T C 4751 4747 Ile32Thr
95 India 27297 C T 4751 4737 Ile32Ile
96 India 27298 A C 4751 4747 Ile33Leu
97 India 27299 T 4751 4748
98 India 27300 A 4751 4748
99 India 27301 A 4751 4748
100 India 27302 A G 4751 4748 Asn34Ser
101 India 27303 C 4751 4749
102 India 27304 C 4749 4747
103 India 27305 T 4749 4747
104 India 27306 C 4749 4747
105 India 27307 A G 4749 4745 Ile36Val
106 India 27308 T 4749 4747
107 India 27309 A 4749 4747
108 India 27310 A 4749 4747
109 India 27311 T 4749 4747
110 India 27312 T 4750 4748
111 India 27313 A 4750 4747
112 India 27314 A 4749 4747
113 India 27315 A 4749 4747
114 India 27316 A 4749 4747
115 India 27317 A 4749 4746
116 India 27318 T 4749 4746
117 India 27319 T 4749 4746
118 India 27320 T 4749 4747
119 India 27321 A 4749 4746
120 India 27322 T 4750 4748
121 India 27323 C 4750 4747
122 India 27324 T 4750 4748
123 India 27325 A 4750 4750
124 India 27326 A 4750 4750
125 India 27327 G T 4750 4744 Lys42Asn
126 India 27328 T 4750 4749
127 India 27329 C 4750 4749
128 India 27330 A G 4750 4748 Ser43Ser
129 India 27331 C T 4750 4735 Leu44Leu
130 India 27332 T 4750 4749
131 India 27333 A 4750 4749
132 India 27334 A 4750 4749
133 India 27335 C 4750 4749
134 India 27336 T 4750 4747
135 India 27337 G 4750 4747
136 India 27338 A 4750 4747
137 India 27339 G 4750 4747
138 India 27340 A 4750 4746
139 India 27341 A 4750 4748
140 India 27342 T 4750 4747
141 India 27343 A 4750 4748
142 India 27344 A G 4750 4747 Lys48Arg
143 India 27345 A 4750 4748
144 India 27346 T C 4749 4744 Tyr49His
145 India 27347 A 4749 4747
146 India 27348 T C 4749 4746 Tyr49Tyr
147 India 27349 T C 4749 4746 Ser50Pro
148 India 27350 C 4749 4748
149 India 27351 T 4748 4747
150 India 27352 C 4748 4745
151 India 27353 A 4748 4747
152 India 27354 A 4748 4745
153 India 27355 T C 4748 4737 Leu52Leu
154 India 27356 T 4748 4747
155 India 27357 A 4748 4748
156 India 27358 G T 4749 4745 Asp53Tyr
157 India 27359 A G 4749 4747 Asp53Gly
158 India 27360 T 4749 4749
159 India 27361 G T 4747 4745 Glu54*
160 India 27362 A 4747 4747
161 India 27363 A 4746 4746
162 India 27364 G T 4745 4742 Glu55*
163 India 27365 A 4742 4742
164 India 27366 G 4739 4739
165 India 27367 C 4736 4735
166 India 27368 A 4736 4735
167 India 27369 A 4736 4736
168 India 27370 C 4735 4734
169 India 27371 C T 4735 4733 Pro57Leu
170 India 27372 A 4734 4733
171 India 27373 A 4734 4733
172 India 27374 T 4734 4732
173 India 27375 G C 4733 4730 Met58Ile
174 India 27376 G C 4732 4731 Glu59Gln
175 India 27377 A 4732 4732
176 India 27378 G T 4732 4731 Glu59Asp
177 India 27379 A G 4732 4725 Ile60Val
178 India 27380 T 4732 4732
179 India 27381 T C 4732 4731 Ile60Ile
180 India 27382 G T,C 4723 4717 Asp61Tyr-p.Asp61His
181 India 27383 A 4723 4723
182 India 27384 T C 4723 4604 Asp61Asp
183 India 27385 T 4723 4723
184 India 27386 A 4723 4723
185 India 27387 A 4722 4722