National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F G H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
D     12   1     1                           1
E 1   16   1                                  
F     9                 1                    
G                                            
H     3                 1                    
I     30             2                 1      
K     12                                      
L     24                 3                    
M     9                                      
N     12                                      
P     3                                      
Q     9                       1              
R     3                                      
S     12                                      
T     9                                      
V     9                                      
W     3                                      
Y     6                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iceland 27202 A 4153 4153
1 Iceland 27203 T 4154 4154
2 Iceland 27204 G 4155 4155
3 Iceland 27205 T 4155 4154
4 Iceland 27206 T 4155 4155
5 Iceland 27207 T 4155 4153
6 Iceland 27208 C 4155 4155
7 Iceland 27209 A T 4155 4152 His3Leu
8 Iceland 27210 T 4155 4155
9 Iceland 27211 C 4155 4154
10 Iceland 27212 T 4155 4155
11 Iceland 27213 C T 4156 4125 Leu4Leu
12 Iceland 27214 G 4156 4155
13 Iceland 27215 T 4156 4156
14 Iceland 27216 T 4156 4156
15 Iceland 27217 G T 4156 4155 Asp6Tyr
16 Iceland 27218 A G 4156 4153 Asp6Gly
17 Iceland 27219 C 4156 4156
18 Iceland 27220 T C 4156 4146 Phe7Leu
19 Iceland 27221 T 4156 4156
20 Iceland 27222 T 4156 4156
21 Iceland 27223 C 4156 4156
22 Iceland 27224 A C 4156 4155 Gln8Pro
23 Iceland 27225 G 4156 4156
24 Iceland 27226 G 4156 4156
25 Iceland 27227 T 4156 4156
26 Iceland 27228 T 4156 4155
27 Iceland 27229 A 4156 4153
28 Iceland 27230 C 4156 4154
29 Iceland 27231 T 4156 4155
30 Iceland 27232 A 4156 4155
31 Iceland 27233 T 4156 4155
32 Iceland 27234 A 4156 4155
33 Iceland 27235 G 4156 4155
34 Iceland 27236 C 4155 4153
35 Iceland 27237 A 4155 4154
36 Iceland 27238 G 4155 4154
37 Iceland 27239 A 4155 4153
38 Iceland 27240 G 4155 4154
39 Iceland 27241 A 4155 4154
40 Iceland 27242 T 4155 4154
41 Iceland 27243 A 4155 4154
42 Iceland 27244 T 4155 4154
43 Iceland 27245 T 4155 4154
44 Iceland 27246 A 4155 4154
45 Iceland 27247 C T 4155 4151 Leu16Leu
46 Iceland 27248 T 4155 4154
47 Iceland 27249 A 4155 4155
48 Iceland 27250 A 4155 4155
49 Iceland 27251 T 4155 4155
50 Iceland 27252 T 4155 4155
51 Iceland 27253 A 4155 4154
52 Iceland 27254 T 4155 4155
53 Iceland 27255 T 4155 4155
54 Iceland 27256 A 4155 4155
55 Iceland 27257 T 4155 4155
56 Iceland 27258 G 4155 4155
57 Iceland 27259 A 4155 4155
58 Iceland 27260 G 4155 4155
59 Iceland 27261 G 4155 4155
60 Iceland 27262 A 4153 4152
61 Iceland 27263 C 4153 4153
62 Iceland 27264 T 4153 4153
63 Iceland 27265 T 4153 4153
64 Iceland 27266 T 4153 4153
65 Iceland 27267 T 4153 4153
66 Iceland 27268 A 4153 4153
67 Iceland 27269 A 4153 4153
68 Iceland 27270 A 4153 4153
69 Iceland 27271 G 4153 4153
70 Iceland 27272 T 4153 4153
71 Iceland 27273 T 4153 4153
72 Iceland 27274 T 4153 4153
73 Iceland 27275 C 4153 4153
74 Iceland 27276 C 4153 4153
75 Iceland 27277 A 4153 4153
76 Iceland 27278 T 4153 4152
77 Iceland 27279 T 4153 4152
78 Iceland 27280 T 4153 4152
79 Iceland 27281 G 4153 4152
80 Iceland 27282 G 4153 4152
81 Iceland 27283 A 4153 4153
82 Iceland 27284 A 4153 4153
83 Iceland 27285 T 4153 4153
84 Iceland 27286 C 4153 4153
85 Iceland 27287 T 4153 4151
86 Iceland 27288 T 4153 4153
87 Iceland 27289 G 4153 4153
88 Iceland 27290 A 4153 4153
89 Iceland 27291 T 4153 4152
90 Iceland 27292 T 4153 4153
91 Iceland 27293 A 4152 4150
92 Iceland 27294 C 4152 4151
93 Iceland 27295 A 4152 4150
94 Iceland 27296 T 4152 4151
95 Iceland 27297 C T 4152 4148 Ile32Ile
96 Iceland 27298 A 4152 4151
97 Iceland 27299 T C 4152 4149 Ile33Thr
98 Iceland 27300 A 4152 4151
99 Iceland 27301 A 4152 4150
100 Iceland 27302 A 4152 4151
101 Iceland 27303 C 4152 4150
102 Iceland 27304 C 4152 4150
103 Iceland 27305 T 4151 4149
104 Iceland 27306 C 4151 4149
105 Iceland 27307 A 4151 4149
106 Iceland 27308 T 4151 4149
107 Iceland 27309 A 4151 4150
108 Iceland 27310 A 4151 4150
109 Iceland 27311 T 4151 4150
110 Iceland 27312 T C 4151 4145 Ile37Ile
111 Iceland 27313 A 4151 4150
112 Iceland 27314 A 4151 4150
113 Iceland 27315 A 4150 4149
114 Iceland 27316 A 4150 4149
115 Iceland 27317 A 4149 4148
116 Iceland 27318 T 4149 4148
117 Iceland 27319 T C 4149 4145 Leu40Leu
118 Iceland 27320 T 4149 4148
119 Iceland 27321 A 4149 4148
120 Iceland 27322 T 4151 4150
121 Iceland 27323 C 4151 4150
122 Iceland 27324 T 4151 4150
123 Iceland 27325 A 4151 4150
124 Iceland 27326 A 4151 4150
125 Iceland 27327 G 4151 4150
126 Iceland 27328 T 4151 4150
127 Iceland 27329 C 4151 4150
128 Iceland 27330 A 4151 4151
129 Iceland 27331 C 4151 4151
130 Iceland 27332 T 4151 4151
131 Iceland 27333 A 4151 4150
132 Iceland 27334 A 4151 4150
133 Iceland 27335 C 4151 4150
134 Iceland 27336 T 4151 4150
135 Iceland 27337 G 4151 4150
136 Iceland 27338 A 4151 4150
137 Iceland 27339 G 4151 4150
138 Iceland 27340 A 4151 4150
139 Iceland 27341 A 4151 4150
140 Iceland 27342 T 4151 4151
141 Iceland 27343 A 4151 4151
142 Iceland 27344 A 4151 4150
143 Iceland 27345 A 4151 4151
144 Iceland 27346 T 4151 4149
145 Iceland 27347 A 4151 4151
146 Iceland 27348 T C 4151 4149 Tyr49Tyr
147 Iceland 27349 T 4151 4150
148 Iceland 27350 C 4151 4150
149 Iceland 27351 T 4151 4150
150 Iceland 27352 C 4151 4150
151 Iceland 27353 A 4151 4151
152 Iceland 27354 A 4151 4149
153 Iceland 27355 T 4151 4150
154 Iceland 27356 T 4151 4151
155 Iceland 27357 A 4151 4151
156 Iceland 27358 G 4150 4145
157 Iceland 27359 A 4150 4150
158 Iceland 27360 T 4150 4149
159 Iceland 27361 G T 4149 4147 Glu54*
160 Iceland 27362 A 4149 4148
161 Iceland 27363 A 4149 4149
162 Iceland 27364 G 4148 4147
163 Iceland 27365 A 4147 4147
164 Iceland 27366 G 4146 4146
165 Iceland 27367 C 4146 4145
166 Iceland 27368 A 4146 4146
167 Iceland 27369 A 4146 4146
168 Iceland 27370 C 4146 4146
169 Iceland 27371 C 4146 4146
170 Iceland 27372 A 4146 4146
171 Iceland 27373 A 4146 4146
172 Iceland 27374 T 4146 4146
173 Iceland 27375 G 4145 4144
174 Iceland 27376 G 4144 4144
175 Iceland 27377 A 4144 4143
176 Iceland 27378 G T 4144 4143 Glu59Asp
177 Iceland 27379 A 4144 4144
178 Iceland 27380 T 4144 4143
179 Iceland 27381 T 4144 4143
180 Iceland 27382 G 4143 4142
181 Iceland 27383 A 4143 4143
182 Iceland 27384 T C 4143 4137 Asp61Asp
183 Iceland 27385 T 4143 4143
184 Iceland 27386 A 4143 4143
185 Iceland 27387 A 4143 4143