National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1                                
E 1   16   1                                
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24               1                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                           1        
S     12                                    
T     9                                    
V     9       1                            
W     3                                    
Y     6                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Hungary 27202 A 278 278
1 Hungary 27203 T 278 278
2 Hungary 27204 G 278 278
3 Hungary 27205 T 278 278
4 Hungary 27206 T 278 278
5 Hungary 27207 T 278 278
6 Hungary 27208 C 278 278
7 Hungary 27209 A 278 278
8 Hungary 27210 T 278 278
9 Hungary 27211 C 278 278
10 Hungary 27212 T 278 278
11 Hungary 27213 C T 278 277 Leu4Leu
12 Hungary 27214 G 278 278
13 Hungary 27215 T 278 278
14 Hungary 27216 T 278 278
15 Hungary 27217 G 278 278
16 Hungary 27218 A 278 278
17 Hungary 27219 C 278 278
18 Hungary 27220 T 278 278
19 Hungary 27221 T 278 278
20 Hungary 27222 T 278 278
21 Hungary 27223 C 278 278
22 Hungary 27224 A 278 278
23 Hungary 27225 G 278 278
24 Hungary 27226 G T 278 277 Val9Phe
25 Hungary 27227 T 278 278
26 Hungary 27228 T 278 278
27 Hungary 27229 A 278 278
28 Hungary 27230 C 278 278
29 Hungary 27231 T 278 278
30 Hungary 27232 A 278 278
31 Hungary 27233 T 278 278
32 Hungary 27234 A 278 278
33 Hungary 27235 G 278 278
34 Hungary 27236 C 278 278
35 Hungary 27237 A 278 278
36 Hungary 27238 G 278 278
37 Hungary 27239 A 278 278
38 Hungary 27240 G 278 278
39 Hungary 27241 A 278 278
40 Hungary 27242 T 278 278
41 Hungary 27243 A 278 278
42 Hungary 27244 T 278 278
43 Hungary 27245 T 278 278
44 Hungary 27246 A 278 278
45 Hungary 27247 C 278 278
46 Hungary 27248 T 278 278
47 Hungary 27249 A 278 278
48 Hungary 27250 A 278 278
49 Hungary 27251 T 278 278
50 Hungary 27252 T 278 278
51 Hungary 27253 A 278 278
52 Hungary 27254 T 278 278
53 Hungary 27255 T 278 278
54 Hungary 27256 A 278 278
55 Hungary 27257 T 278 278
56 Hungary 27258 G 278 278
57 Hungary 27259 A 278 278
58 Hungary 27260 G 278 278
59 Hungary 27261 G T 278 277 Arg20Ser
60 Hungary 27262 A 278 278
61 Hungary 27263 C 278 278
62 Hungary 27264 T 278 278
63 Hungary 27265 T 278 278
64 Hungary 27266 T 278 278
65 Hungary 27267 T 278 278
66 Hungary 27268 A 278 278
67 Hungary 27269 A 278 278
68 Hungary 27270 A 278 278
69 Hungary 27271 G 278 278
70 Hungary 27272 T 278 278
71 Hungary 27273 T 278 278
72 Hungary 27274 T 278 278
73 Hungary 27275 C 278 278
74 Hungary 27276 C 278 278
75 Hungary 27277 A 278 278
76 Hungary 27278 T 278 278
77 Hungary 27279 T 278 278
78 Hungary 27280 T 278 278
79 Hungary 27281 G 278 278
80 Hungary 27282 G 278 278
81 Hungary 27283 A 278 278
82 Hungary 27284 A 278 278
83 Hungary 27285 T 278 278
84 Hungary 27286 C 278 278
85 Hungary 27287 T 278 278
86 Hungary 27288 T 278 278
87 Hungary 27289 G 278 278
88 Hungary 27290 A 278 278
89 Hungary 27291 T 278 278
90 Hungary 27292 T 278 278
91 Hungary 27293 A 278 278
92 Hungary 27294 C T 278 277 Tyr31Tyr
93 Hungary 27295 A 278 278
94 Hungary 27296 T 278 278
95 Hungary 27297 C 278 278
96 Hungary 27298 A 278 278
97 Hungary 27299 T 278 278
98 Hungary 27300 A 278 278
99 Hungary 27301 A 278 278
100 Hungary 27302 A 278 278
101 Hungary 27303 C 278 278
102 Hungary 27304 C 278 278
103 Hungary 27305 T 278 278
104 Hungary 27306 C 278 278
105 Hungary 27307 A 278 278
106 Hungary 27308 T 278 278
107 Hungary 27309 A 278 278
108 Hungary 27310 A 278 278
109 Hungary 27311 T 278 278
110 Hungary 27312 T 278 278
111 Hungary 27313 A 278 278
112 Hungary 27314 A 278 278
113 Hungary 27315 A 278 278
114 Hungary 27316 A 278 278
115 Hungary 27317 A 278 278
116 Hungary 27318 T 278 278
117 Hungary 27319 T 278 278
118 Hungary 27320 T 278 278
119 Hungary 27321 A 278 278
120 Hungary 27322 T 278 278
121 Hungary 27323 C 278 278
122 Hungary 27324 T 278 278
123 Hungary 27325 A 278 278
124 Hungary 27326 A 278 278
125 Hungary 27327 G 278 278
126 Hungary 27328 T 278 278
127 Hungary 27329 C 278 278
128 Hungary 27330 A 278 278
129 Hungary 27331 C 278 278
130 Hungary 27332 T 278 278
131 Hungary 27333 A 278 278
132 Hungary 27334 A 278 278
133 Hungary 27335 C 278 278
134 Hungary 27336 T 278 278
135 Hungary 27337 G 278 278
136 Hungary 27338 A 278 278
137 Hungary 27339 G 278 278
138 Hungary 27340 A 278 278
139 Hungary 27341 A 278 278
140 Hungary 27342 T 278 278
141 Hungary 27343 A 278 278
142 Hungary 27344 A 278 278
143 Hungary 27345 A 278 278
144 Hungary 27346 T 278 278
145 Hungary 27347 A 278 278
146 Hungary 27348 T 278 278
147 Hungary 27349 T 278 278
148 Hungary 27350 C 278 278
149 Hungary 27351 T 278 278
150 Hungary 27352 C 278 278
151 Hungary 27353 A 278 278
152 Hungary 27354 A 278 278
153 Hungary 27355 T 278 278
154 Hungary 27356 T 278 278
155 Hungary 27357 A 278 278
156 Hungary 27358 G 278 278
157 Hungary 27359 A 278 278
158 Hungary 27360 T 278 278
159 Hungary 27361 G 278 278
160 Hungary 27362 A 278 278
161 Hungary 27363 A 278 278
162 Hungary 27364 G T 278 257 Glu55*
163 Hungary 27365 A 278 278
164 Hungary 27366 G T 278 277 Glu55Asp
165 Hungary 27367 C 278 278
166 Hungary 27368 A 278 278
167 Hungary 27369 A 278 278
168 Hungary 27370 C 278 278
169 Hungary 27371 C 278 278
170 Hungary 27372 A 278 278
171 Hungary 27373 A 278 278
172 Hungary 27374 T 278 278
173 Hungary 27375 G 278 278
174 Hungary 27376 G 278 278
175 Hungary 27377 A 278 278
176 Hungary 27378 G 278 278
177 Hungary 27379 A 278 278
178 Hungary 27380 T 278 278
179 Hungary 27381 T 278 278
180 Hungary 27382 G 278 278
181 Hungary 27383 A 278 278
182 Hungary 27384 T C 278 277 Asp61Asp
183 Hungary 27385 T 278 278
184 Hungary 27386 A 278 278
185 Hungary 27387 A 278 278