National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 27202 A 32 32
1 Guatemala 27203 T 32 32
2 Guatemala 27204 G 32 32
3 Guatemala 27205 T 32 32
4 Guatemala 27206 T 32 32
5 Guatemala 27207 T 32 32
6 Guatemala 27208 C 32 32
7 Guatemala 27209 A 32 32
8 Guatemala 27210 T 32 32
9 Guatemala 27211 C 32 32
10 Guatemala 27212 T 32 32
11 Guatemala 27213 C 32 32
12 Guatemala 27214 G 32 32
13 Guatemala 27215 T 32 32
14 Guatemala 27216 T 32 32
15 Guatemala 27217 G 32 32
16 Guatemala 27218 A 32 32
17 Guatemala 27219 C 32 32
18 Guatemala 27220 T 32 32
19 Guatemala 27221 T 32 32
20 Guatemala 27222 T 32 32
21 Guatemala 27223 C 32 32
22 Guatemala 27224 A 32 32
23 Guatemala 27225 G 32 32
24 Guatemala 27226 G 32 32
25 Guatemala 27227 T 32 32
26 Guatemala 27228 T 32 32
27 Guatemala 27229 A 32 32
28 Guatemala 27230 C 32 32
29 Guatemala 27231 T 32 32
30 Guatemala 27232 A 32 32
31 Guatemala 27233 T 32 32
32 Guatemala 27234 A 32 32
33 Guatemala 27235 G 32 32
34 Guatemala 27236 C 32 32
35 Guatemala 27237 A 32 32
36 Guatemala 27238 G 32 32
37 Guatemala 27239 A 32 32
38 Guatemala 27240 G 32 32
39 Guatemala 27241 A 32 32
40 Guatemala 27242 T 32 32
41 Guatemala 27243 A 32 32
42 Guatemala 27244 T 32 32
43 Guatemala 27245 T 32 32
44 Guatemala 27246 A 32 32
45 Guatemala 27247 C 32 32
46 Guatemala 27248 T 32 32
47 Guatemala 27249 A 32 32
48 Guatemala 27250 A 32 32
49 Guatemala 27251 T 32 32
50 Guatemala 27252 T 32 32
51 Guatemala 27253 A 32 32
52 Guatemala 27254 T 32 32
53 Guatemala 27255 T 32 32
54 Guatemala 27256 A 32 32
55 Guatemala 27257 T 32 32
56 Guatemala 27258 G 32 32
57 Guatemala 27259 A 32 32
58 Guatemala 27260 G 32 32
59 Guatemala 27261 G 32 32
60 Guatemala 27262 A 32 32
61 Guatemala 27263 C 32 32
62 Guatemala 27264 T 32 32
63 Guatemala 27265 T 32 32
64 Guatemala 27266 T 32 32
65 Guatemala 27267 T 32 32
66 Guatemala 27268 A 32 32
67 Guatemala 27269 A 32 32
68 Guatemala 27270 A 32 32
69 Guatemala 27271 G 32 32
70 Guatemala 27272 T 32 32
71 Guatemala 27273 T 32 32
72 Guatemala 27274 T 32 32
73 Guatemala 27275 C 32 32
74 Guatemala 27276 C 32 32
75 Guatemala 27277 A 32 32
76 Guatemala 27278 T 32 32
77 Guatemala 27279 T 32 32
78 Guatemala 27280 T 32 32
79 Guatemala 27281 G 32 32
80 Guatemala 27282 G 32 32
81 Guatemala 27283 A 32 32
82 Guatemala 27284 A 32 32
83 Guatemala 27285 T 32 32
84 Guatemala 27286 C 32 32
85 Guatemala 27287 T 32 32
86 Guatemala 27288 T 32 32
87 Guatemala 27289 G 32 32
88 Guatemala 27290 A 32 32
89 Guatemala 27291 T 32 32
90 Guatemala 27292 T 32 32
91 Guatemala 27293 A 32 32
92 Guatemala 27294 C 32 32
93 Guatemala 27295 A 32 32
94 Guatemala 27296 T 32 32
95 Guatemala 27297 C 32 32
96 Guatemala 27298 A 32 32
97 Guatemala 27299 T 32 32
98 Guatemala 27300 A 32 32
99 Guatemala 27301 A 32 32
100 Guatemala 27302 A 32 32
101 Guatemala 27303 C 32 32
102 Guatemala 27304 C 32 32
103 Guatemala 27305 T 32 32
104 Guatemala 27306 C 32 32
105 Guatemala 27307 A 32 32
106 Guatemala 27308 T 32 32
107 Guatemala 27309 A 32 32
108 Guatemala 27310 A 32 32
109 Guatemala 27311 T 32 32
110 Guatemala 27312 T 32 32
111 Guatemala 27313 A 32 32
112 Guatemala 27314 A 32 32
113 Guatemala 27315 A 32 32
114 Guatemala 27316 A 32 32
115 Guatemala 27317 A 32 32
116 Guatemala 27318 T 32 32
117 Guatemala 27319 T 32 32
118 Guatemala 27320 T 32 32
119 Guatemala 27321 A 32 32
120 Guatemala 27322 T 32 32
121 Guatemala 27323 C 32 32
122 Guatemala 27324 T 32 32
123 Guatemala 27325 A 32 32
124 Guatemala 27326 A 32 32
125 Guatemala 27327 G 32 32
126 Guatemala 27328 T 32 32
127 Guatemala 27329 C 32 32
128 Guatemala 27330 A 32 32
129 Guatemala 27331 C 32 32
130 Guatemala 27332 T 32 32
131 Guatemala 27333 A 32 32
132 Guatemala 27334 A 32 32
133 Guatemala 27335 C 32 32
134 Guatemala 27336 T 32 32
135 Guatemala 27337 G 32 32
136 Guatemala 27338 A 32 32
137 Guatemala 27339 G 32 32
138 Guatemala 27340 A 32 32
139 Guatemala 27341 A 32 32
140 Guatemala 27342 T 32 32
141 Guatemala 27343 A 32 32
142 Guatemala 27344 A 32 32
143 Guatemala 27345 A 32 32
144 Guatemala 27346 T 32 32
145 Guatemala 27347 A 32 32
146 Guatemala 27348 T 32 32
147 Guatemala 27349 T 32 32
148 Guatemala 27350 C 32 32
149 Guatemala 27351 T 32 32
150 Guatemala 27352 C 32 32
151 Guatemala 27353 A 32 32
152 Guatemala 27354 A 32 32
153 Guatemala 27355 T 32 32
154 Guatemala 27356 T 32 32
155 Guatemala 27357 A 32 32
156 Guatemala 27358 G 32 32
157 Guatemala 27359 A 32 32
158 Guatemala 27360 T 32 32
159 Guatemala 27361 G 32 32
160 Guatemala 27362 A 32 32
161 Guatemala 27363 A 32 32
162 Guatemala 27364 G 32 32
163 Guatemala 27365 A 32 32
164 Guatemala 27366 G 32 32
165 Guatemala 27367 C 32 32
166 Guatemala 27368 A 32 32
167 Guatemala 27369 A 32 32
168 Guatemala 27370 C 32 32
169 Guatemala 27371 C 32 32
170 Guatemala 27372 A 32 32
171 Guatemala 27373 A 32 32
172 Guatemala 27374 T 32 32
173 Guatemala 27375 G 32 32
174 Guatemala 27376 G 32 32
175 Guatemala 27377 A 32 32
176 Guatemala 27378 G 32 32
177 Guatemala 27379 A 32 32
178 Guatemala 27380 T 32 32
179 Guatemala 27381 T 32 32
180 Guatemala 27382 G 32 32
181 Guatemala 27383 A 32 32
182 Guatemala 27384 T 32 32
183 Guatemala 27385 T 32 32
184 Guatemala 27386 A 32 32
185 Guatemala 27387 A 32 32