National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9           2                        
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 27202 A 139 139
1 Greece 27203 T 139 139
2 Greece 27204 G 139 139
3 Greece 27205 T 139 139
4 Greece 27206 T 139 139
5 Greece 27207 T 139 139
6 Greece 27208 C 139 139
7 Greece 27209 A 139 139
8 Greece 27210 T 139 139
9 Greece 27211 C 139 139
10 Greece 27212 T 139 139
11 Greece 27213 C 139 139
12 Greece 27214 G 139 139
13 Greece 27215 T 139 139
14 Greece 27216 T 139 139
15 Greece 27217 G 139 139
16 Greece 27218 A 139 139
17 Greece 27219 C 139 139
18 Greece 27220 T 139 139
19 Greece 27221 T 139 139
20 Greece 27222 T 139 139
21 Greece 27223 C 139 139
22 Greece 27224 A 139 139
23 Greece 27225 G 139 139
24 Greece 27226 G 139 139
25 Greece 27227 T 139 139
26 Greece 27228 T 139 139
27 Greece 27229 A 139 139
28 Greece 27230 C T 139 137 Thr10Ile
29 Greece 27231 T 139 139
30 Greece 27232 A 139 139
31 Greece 27233 T 139 139
32 Greece 27234 A 139 139
33 Greece 27235 G 139 139
34 Greece 27236 C 139 139
35 Greece 27237 A 139 139
36 Greece 27238 G 139 139
37 Greece 27239 A 139 139
38 Greece 27240 G 139 139
39 Greece 27241 A 139 139
40 Greece 27242 T 139 139
41 Greece 27243 A 139 139
42 Greece 27244 T 139 139
43 Greece 27245 T 139 139
44 Greece 27246 A 139 139
45 Greece 27247 C 139 139
46 Greece 27248 T 139 139
47 Greece 27249 A 131 131
48 Greece 27250 A 131 131
49 Greece 27251 T 131 131
50 Greece 27252 T 131 131
51 Greece 27253 A 131 131
52 Greece 27254 T 131 131
53 Greece 27255 T 131 131
54 Greece 27256 A 131 131
55 Greece 27257 T 131 131
56 Greece 27258 G 131 131
57 Greece 27259 A 131 131
58 Greece 27260 G 131 131
59 Greece 27261 G 131 131
60 Greece 27262 A 131 131
61 Greece 27263 C T 131 130 Thr21Ile
62 Greece 27264 T 131 131
63 Greece 27265 T 131 131
64 Greece 27266 T 131 131
65 Greece 27267 T 131 131
66 Greece 27268 A 131 131
67 Greece 27269 A 131 131
68 Greece 27270 A 131 131
69 Greece 27271 G 131 131
70 Greece 27272 T 131 131
71 Greece 27273 T 131 131
72 Greece 27274 T 131 131
73 Greece 27275 C 131 131
74 Greece 27276 C 131 131
75 Greece 27277 A 131 131
76 Greece 27278 T 131 131
77 Greece 27279 T 131 131
78 Greece 27280 T 131 131
79 Greece 27281 G 131 131
80 Greece 27282 G 131 131
81 Greece 27283 A 131 131
82 Greece 27284 A 131 131
83 Greece 27285 T 131 131
84 Greece 27286 C 131 131
85 Greece 27287 T 131 131
86 Greece 27288 T 131 131
87 Greece 27289 G 131 131
88 Greece 27290 A 131 131
89 Greece 27291 T 131 131
90 Greece 27292 T 131 131
91 Greece 27293 A 131 131
92 Greece 27294 C 131 131
93 Greece 27295 A 131 131
94 Greece 27296 T 131 131
95 Greece 27297 C 131 131
96 Greece 27298 A 131 131
97 Greece 27299 T 131 131
98 Greece 27300 A 131 131
99 Greece 27301 A 131 131
100 Greece 27302 A 131 131
101 Greece 27303 C 131 131
102 Greece 27304 C 131 131
103 Greece 27305 T 131 131
104 Greece 27306 C 131 131
105 Greece 27307 A 131 131
106 Greece 27308 T 131 131
107 Greece 27309 A 131 131
108 Greece 27310 A 131 131
109 Greece 27311 T 131 131
110 Greece 27312 T 131 131
111 Greece 27313 A 131 131
112 Greece 27314 A 131 131
113 Greece 27315 A 131 131
114 Greece 27316 A 131 131
115 Greece 27317 A 131 130
116 Greece 27318 T 131 131
117 Greece 27319 T 131 131
118 Greece 27320 T 131 131
119 Greece 27321 A 131 131
120 Greece 27322 T 131 131
121 Greece 27323 C 131 130
122 Greece 27324 T 131 131
123 Greece 27325 A 131 131
124 Greece 27326 A 131 131
125 Greece 27327 G 131 131
126 Greece 27328 T 131 131
127 Greece 27329 C 131 131
128 Greece 27330 A 131 131
129 Greece 27331 C 131 131
130 Greece 27332 T 131 131
131 Greece 27333 A 131 131
132 Greece 27334 A 131 131
133 Greece 27335 C 131 131
134 Greece 27336 T 131 131
135 Greece 27337 G 131 131
136 Greece 27338 A 131 131
137 Greece 27339 G 131 131
138 Greece 27340 A 131 131
139 Greece 27341 A 131 131
140 Greece 27342 T 131 131
141 Greece 27343 A 131 131
142 Greece 27344 A 131 131
143 Greece 27345 A 131 131
144 Greece 27346 T 131 131
145 Greece 27347 A 131 131
146 Greece 27348 T 131 131
147 Greece 27349 T 131 131
148 Greece 27350 C 131 131
149 Greece 27351 T 131 131
150 Greece 27352 C 131 131
151 Greece 27353 A 131 131
152 Greece 27354 A 131 131
153 Greece 27355 T 131 131
154 Greece 27356 T 131 131
155 Greece 27357 A 131 131
156 Greece 27358 G 131 131
157 Greece 27359 A 131 131
158 Greece 27360 T 131 131
159 Greece 27361 G 131 131
160 Greece 27362 A 131 131
161 Greece 27363 A 131 131
162 Greece 27364 G 131 131
163 Greece 27365 A 131 131
164 Greece 27366 G 131 131
165 Greece 27367 C 131 131
166 Greece 27368 A 131 131
167 Greece 27369 A 131 131
168 Greece 27370 C 131 131
169 Greece 27371 C 131 131
170 Greece 27372 A 131 131
171 Greece 27373 A 131 131
172 Greece 27374 T 131 131
173 Greece 27375 G 131 131
174 Greece 27376 G 131 131
175 Greece 27377 A 131 131
176 Greece 27378 G 131 131
177 Greece 27379 A 131 131
178 Greece 27380 T 131 131
179 Greece 27381 T 131 131
180 Greece 27382 G 131 131
181 Greece 27383 A 131 131
182 Greece 27384 T 131 131
183 Greece 27385 T 131 131
184 Greece 27386 A 131 131
185 Greece 27387 A 131 131