National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24           1                        
M     9               1                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Ghana 27202 A 114 114
1 Ghana 27203 T 114 114
2 Ghana 27204 G 114 114
3 Ghana 27205 T 114 114
4 Ghana 27206 T 114 114
5 Ghana 27207 T 114 114
6 Ghana 27208 C 114 114
7 Ghana 27209 A 114 114
8 Ghana 27210 T 114 114
9 Ghana 27211 C A 114 111 Leu4Ile
10 Ghana 27212 T 114 114
11 Ghana 27213 C 114 114
12 Ghana 27214 G 114 114
13 Ghana 27215 T 114 114
14 Ghana 27216 T 114 114
15 Ghana 27217 G 114 114
16 Ghana 27218 A 114 114
17 Ghana 27219 C 114 114
18 Ghana 27220 T 114 114
19 Ghana 27221 T 114 114
20 Ghana 27222 T 114 114
21 Ghana 27223 C 114 114
22 Ghana 27224 A 114 114
23 Ghana 27225 G 114 114
24 Ghana 27226 G 114 114
25 Ghana 27227 T 114 114
26 Ghana 27228 T 114 114
27 Ghana 27229 A 114 114
28 Ghana 27230 C 114 114
29 Ghana 27231 T 114 114
30 Ghana 27232 A 114 114
31 Ghana 27233 T 114 114
32 Ghana 27234 A 114 114
33 Ghana 27235 G 114 114
34 Ghana 27236 C 114 114
35 Ghana 27237 A 114 114
36 Ghana 27238 G 114 114
37 Ghana 27239 A 114 114
38 Ghana 27240 G 114 114
39 Ghana 27241 A 114 114
40 Ghana 27242 T 114 114
41 Ghana 27243 A 114 114
42 Ghana 27244 T 114 114
43 Ghana 27245 T 114 114
44 Ghana 27246 A 114 114
45 Ghana 27247 C 114 114
46 Ghana 27248 T 114 114
47 Ghana 27249 A 114 114
48 Ghana 27250 A 114 114
49 Ghana 27251 T 114 114
50 Ghana 27252 T 114 114
51 Ghana 27253 A 114 114
52 Ghana 27254 T 114 114
53 Ghana 27255 T 114 114
54 Ghana 27256 A 114 114
55 Ghana 27257 T 114 114
56 Ghana 27258 G 114 114
57 Ghana 27259 A 114 114
58 Ghana 27260 G 114 114
59 Ghana 27261 G 114 114
60 Ghana 27262 A 114 114
61 Ghana 27263 C 114 114
62 Ghana 27264 T 114 114
63 Ghana 27265 T 114 114
64 Ghana 27266 T 114 114
65 Ghana 27267 T 114 114
66 Ghana 27268 A 114 114
67 Ghana 27269 A 114 114
68 Ghana 27270 A 114 114
69 Ghana 27271 G 114 114
70 Ghana 27272 T 114 114
71 Ghana 27273 T 114 114
72 Ghana 27274 T 114 114
73 Ghana 27275 C 114 114
74 Ghana 27276 C 114 114
75 Ghana 27277 A 114 114
76 Ghana 27278 T 114 114
77 Ghana 27279 T 114 114
78 Ghana 27280 T 114 114
79 Ghana 27281 G 114 114
80 Ghana 27282 G 114 114
81 Ghana 27283 A 114 114
82 Ghana 27284 A 114 114
83 Ghana 27285 T 114 114
84 Ghana 27286 C 114 114
85 Ghana 27287 T 114 114
86 Ghana 27288 T 114 114
87 Ghana 27289 G 114 114
88 Ghana 27290 A 114 114
89 Ghana 27291 T 114 114
90 Ghana 27292 T 114 114
91 Ghana 27293 A 114 114
92 Ghana 27294 C 114 114
93 Ghana 27295 A 114 114
94 Ghana 27296 T 114 114
95 Ghana 27297 C 114 114
96 Ghana 27298 A 114 114
97 Ghana 27299 T 114 114
98 Ghana 27300 A 114 114
99 Ghana 27301 A 114 114
100 Ghana 27302 A 114 114
101 Ghana 27303 C 114 114
102 Ghana 27304 C 114 114
103 Ghana 27305 T 114 114
104 Ghana 27306 C 114 114
105 Ghana 27307 A 114 114
106 Ghana 27308 T 114 114
107 Ghana 27309 A 114 114
108 Ghana 27310 A 114 114
109 Ghana 27311 T 114 114
110 Ghana 27312 T 114 114
111 Ghana 27313 A 114 114
112 Ghana 27314 A 114 114
113 Ghana 27315 A 114 114
114 Ghana 27316 A 114 114
115 Ghana 27317 A 114 114
116 Ghana 27318 T 114 114
117 Ghana 27319 T 114 114
118 Ghana 27320 T 114 114
119 Ghana 27321 A 114 114
120 Ghana 27322 T 114 114
121 Ghana 27323 C 114 114
122 Ghana 27324 T 114 114
123 Ghana 27325 A 114 114
124 Ghana 27326 A 114 114
125 Ghana 27327 G 114 114
126 Ghana 27328 T 114 114
127 Ghana 27329 C 114 114
128 Ghana 27330 A 114 114
129 Ghana 27331 C 114 114
130 Ghana 27332 T 114 114
131 Ghana 27333 A 114 114
132 Ghana 27334 A 114 114
133 Ghana 27335 C 114 114
134 Ghana 27336 T 114 114
135 Ghana 27337 G 114 114
136 Ghana 27338 A 114 114
137 Ghana 27339 G 114 114
138 Ghana 27340 A 114 114
139 Ghana 27341 A 114 114
140 Ghana 27342 T 114 114
141 Ghana 27343 A 114 114
142 Ghana 27344 A 114 114
143 Ghana 27345 A 114 114
144 Ghana 27346 T 114 114
145 Ghana 27347 A 114 114
146 Ghana 27348 T 114 114
147 Ghana 27349 T 114 114
148 Ghana 27350 C 114 114
149 Ghana 27351 T 114 114
150 Ghana 27352 C 114 114
151 Ghana 27353 A 114 114
152 Ghana 27354 A 114 114
153 Ghana 27355 T 114 114
154 Ghana 27356 T 114 114
155 Ghana 27357 A 114 114
156 Ghana 27358 G 114 114
157 Ghana 27359 A 114 114
158 Ghana 27360 T 114 114
159 Ghana 27361 G 114 114
160 Ghana 27362 A 114 114
161 Ghana 27363 A 114 114
162 Ghana 27364 G 114 114
163 Ghana 27365 A 114 114
164 Ghana 27366 G 114 114
165 Ghana 27367 C 114 114
166 Ghana 27368 A 114 114
167 Ghana 27369 A 114 114
168 Ghana 27370 C 114 114
169 Ghana 27371 C 114 114
170 Ghana 27372 A 114 114
171 Ghana 27373 A T 114 113 Met58Leu
172 Ghana 27374 T 114 114
173 Ghana 27375 G 114 114
174 Ghana 27376 G 114 114
175 Ghana 27377 A 114 114
176 Ghana 27378 G 114 114
177 Ghana 27379 A 114 114
178 Ghana 27380 T 114 114
179 Ghana 27381 T 114 114
180 Ghana 27382 G 114 114
181 Ghana 27383 A 114 114
182 Ghana 27384 T 114 114
183 Ghana 27385 T 114 114
184 Ghana 27386 A 114 114
185 Ghana 27387 A 114 114