National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F G H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
D     12   3                 1               3
E     16   1 1   1                            
F     9                 1                   1
G                                            
H     3   1                                 1
I     30             1 1   1           1 2    
K     12             1       2                
L     24                 4                    
M     9             2                        
N     12                     2                
P     3                 1     1     1        
Q 1   9                       1 1            
R     3                             1        
S     12                       1     1        
T     9             1                 1      
V     9 1           1                   2    
W     3                 1                    
Y     6                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Germany 27202 A 4427 4427
1 Germany 27203 T 4427 4427
2 Germany 27204 G T 4429 4427 Met1?
3 Germany 27205 T 4430 4430
4 Germany 27206 T A 4430 4429 Phe2Tyr
5 Germany 27207 T 4430 4430
6 Germany 27208 C T,G 4430 4428 His3Tyr-p.His3Asp
7 Germany 27209 A 4430 4430
8 Germany 27210 T 4435 4435
9 Germany 27211 C 4435 4435
10 Germany 27212 T 4435 4435
11 Germany 27213 C T 4435 4429 Leu4Leu
12 Germany 27214 G A 4435 4432 Val5Ile
13 Germany 27215 T 4435 4433
14 Germany 27216 T A 4435 4432 Val5Val
15 Germany 27217 G T 4436 4432 Asp6Tyr
16 Germany 27218 A 4436 4435
17 Germany 27219 C T 4436 4434 Asp6Asp
18 Germany 27220 T C 4436 4405 Phe7Leu
19 Germany 27221 T 4437 4436
20 Germany 27222 T 4438 4435
21 Germany 27223 C T 4438 4437 Gln8*
22 Germany 27224 A C 4438 4435 Gln8Pro
23 Germany 27225 G 4438 4438
24 Germany 27226 G 4438 4438
25 Germany 27227 T 4438 4438
26 Germany 27228 T 4438 4438
27 Germany 27229 A 4438 4438
28 Germany 27230 C 4438 4438
29 Germany 27231 T 4440 4440
30 Germany 27232 A 4440 4440
31 Germany 27233 T A 4440 4439 Ile11Lys
32 Germany 27234 A 4440 4440
33 Germany 27235 G 4440 4440
34 Germany 27236 C 4440 4440
35 Germany 27237 A 4440 4440
36 Germany 27238 G 4440 4440
37 Germany 27239 A 4440 4440
38 Germany 27240 G 4440 4439
39 Germany 27241 A 4440 4440
40 Germany 27242 T 4440 4440
41 Germany 27243 A G 4440 4438 Ile14Met
42 Germany 27244 T 4440 4436
43 Germany 27245 T 4440 4436
44 Germany 27246 A 4440 4436
45 Germany 27247 C T 4440 4435 Leu16Leu
46 Germany 27248 T 4440 4436
47 Germany 27249 A 4440 4436
48 Germany 27250 A 4440 4436
49 Germany 27251 T 4440 4436
50 Germany 27252 T 4440 4436
51 Germany 27253 A 4440 4436
52 Germany 27254 T 4440 4436
53 Germany 27255 T 4440 4436
54 Germany 27256 A 4440 4436
55 Germany 27257 T 4440 4436
56 Germany 27258 G T 4440 4435 Met19Ile
57 Germany 27259 A 4440 4436
58 Germany 27260 G 4440 4436
59 Germany 27261 G T 4440 4435 Arg20Ser
60 Germany 27262 A 4438 4433
61 Germany 27263 C T 4438 4425 Thr21Ile
62 Germany 27264 T C 4438 4432 Thr21Thr
63 Germany 27265 T 4438 4432
64 Germany 27266 T 4438 4433
65 Germany 27267 T 4438 4432
66 Germany 27268 A 4438 4432
67 Germany 27269 A 4438 4432
68 Germany 27270 A 4438 4432
69 Germany 27271 G 4438 4432
70 Germany 27272 T C 4438 4430 Val24Ala
71 Germany 27273 T C 4438 4431 Val24Val
72 Germany 27274 T 4438 4432
73 Germany 27275 C 4438 4432
74 Germany 27276 C 4438 4432
75 Germany 27277 A G 4438 4426 Ile26Val
76 Germany 27278 T 4438 4432
77 Germany 27279 T 4438 4432
78 Germany 27280 T 4438 4432
79 Germany 27281 G T 4438 4432 Trp27Leu
80 Germany 27282 G 4438 4436
81 Germany 27283 A 4438 4436
82 Germany 27284 A 4438 4436
83 Germany 27285 T 4438 4436
84 Germany 27286 C 4438 4437
85 Germany 27287 T 4440 4439
86 Germany 27288 T 4440 4439
87 Germany 27289 G A 4440 4438 Asp30Asn
88 Germany 27290 A 4440 4439
89 Germany 27291 T 4440 4440
90 Germany 27292 T 4440 4440
91 Germany 27293 A 4440 4440
92 Germany 27294 C T 4440 4437 Tyr31Tyr
93 Germany 27295 A 4440 4439
94 Germany 27296 T 4440 4439
95 Germany 27297 C T 4440 4434 Ile32Ile
96 Germany 27298 A G 4440 4438 Ile33Val
97 Germany 27299 T C 4440 4435 Ile33Thr
98 Germany 27300 A 4440 4439
99 Germany 27301 A 4440 4439
100 Germany 27302 A 4440 4439
101 Germany 27303 C T 4440 4438 Asn34Asn
102 Germany 27304 C 4440 4440
103 Germany 27305 T 4440 4440
104 Germany 27306 C 4440 4440
105 Germany 27307 A 4440 4440
106 Germany 27308 T 4440 4440
107 Germany 27309 A 4440 4440
108 Germany 27310 A 4440 4440
109 Germany 27311 T 4440 4440
110 Germany 27312 T 4440 4440
111 Germany 27313 A 4440 4440
112 Germany 27314 A 4440 4440
113 Germany 27315 A 4465 4465
114 Germany 27316 A 4465 4465
115 Germany 27317 A 4465 4465
116 Germany 27318 T 4465 4465
117 Germany 27319 T C 4465 4433 Leu40Leu
118 Germany 27320 T 4465 4465
119 Germany 27321 A 4463 4460
120 Germany 27322 T C 4465 4462 Ser41Pro
121 Germany 27323 C 4465 4464
122 Germany 27324 T 4465 4464
123 Germany 27325 A 4465 4464
124 Germany 27326 A 4465 4464
125 Germany 27327 G T 4465 4447 Lys42Asn
126 Germany 27328 T 4465 4464
127 Germany 27329 C 4465 4464
128 Germany 27330 A 4465 4464
129 Germany 27331 C 4465 4463
130 Germany 27332 T 4465 4464
131 Germany 27333 A 4465 4464
132 Germany 27334 A 4465 4464
133 Germany 27335 C 4465 4464
134 Germany 27336 T 4465 4464
135 Germany 27337 G 4465 4464
136 Germany 27338 A 4465 4464
137 Germany 27339 G 4465 4464
138 Germany 27340 A 4465 4464
139 Germany 27341 A 4465 4464
140 Germany 27342 T C 4465 4462 Asn47Asn
141 Germany 27343 A 4465 4464
142 Germany 27344 A T 4465 4462 Lys48Ile
143 Germany 27345 A T 4465 4462 Lys48Asn
144 Germany 27346 T 4465 4464
145 Germany 27347 A 4465 4464
146 Germany 27348 T 4465 4464
147 Germany 27349 T 4465 4464
148 Germany 27350 C 4465 4464
149 Germany 27351 T C 4465 4463 Ser50Ser
150 Germany 27352 C 4465 4464
151 Germany 27353 A 4465 4464
152 Germany 27354 A G 4465 4461 Gln51Gln
153 Germany 27355 T 4452 4450
154 Germany 27356 T 4452 4450
155 Germany 27357 A G 4452 4449 Leu52Leu
156 Germany 27358 G T 4452 4446 Asp53Tyr
157 Germany 27359 A 4452 4452
158 Germany 27360 T C 4452 4451 Asp53Asp
159 Germany 27361 G 4452 4452
160 Germany 27362 A 4452 4452
161 Germany 27363 A 4452 4452
162 Germany 27364 G 4452 4452
163 Germany 27365 A 4452 4452
164 Germany 27366 G T,A 4452 4450 Glu55Asp-p.Glu55Glu
165 Germany 27367 C 4452 4452
166 Germany 27368 A 4452 4452
167 Germany 27369 A 4452 4452
168 Germany 27370 C T 4452 4451 Pro57Ser
169 Germany 27371 C T 4452 4445 Pro57Leu
170 Germany 27372 A T 4452 4451 Pro57Pro
171 Germany 27373 A 4452 4452
172 Germany 27374 T 4452 4452
173 Germany 27375 G 4452 4452
174 Germany 27376 G 4452 4452
175 Germany 27377 A G 4452 4445 Glu59Gly
176 Germany 27378 G 4452 4452
177 Germany 27379 A 4452 4452
178 Germany 27380 T 4452 4452
179 Germany 27381 T 4452 4452
180 Germany 27382 G T 4450 4449 Asp61Tyr
181 Germany 27383 A 4450 4450
182 Germany 27384 T C 4449 4442 Asp61Asp
183 Germany 27385 T 4449 4449
184 Germany 27386 A 4449 4449
185 Germany 27387 A 4449 4449