National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 27202 A 26 25
1 Georgia 27203 T 26 25
2 Georgia 27204 G 26 25
3 Georgia 27205 T 26 25
4 Georgia 27206 T 26 25
5 Georgia 27207 T 26 25
6 Georgia 27208 C 26 25
7 Georgia 27209 A 26 25
8 Georgia 27210 T 26 25
9 Georgia 27211 C 26 25
10 Georgia 27212 T 26 25
11 Georgia 27213 C 26 25
12 Georgia 27214 G 26 25
13 Georgia 27215 T 26 25
14 Georgia 27216 T 26 25
15 Georgia 27217 G 26 25
16 Georgia 27218 A 26 25
17 Georgia 27219 C 26 25
18 Georgia 27220 T 26 25
19 Georgia 27221 T 26 25
20 Georgia 27222 T 26 25
21 Georgia 27223 C 26 25
22 Georgia 27224 A 26 25
23 Georgia 27225 G 26 25
24 Georgia 27226 G 26 25
25 Georgia 27227 T 26 25
26 Georgia 27228 T 26 25
27 Georgia 27229 A 26 25
28 Georgia 27230 C 26 25
29 Georgia 27231 T 26 25
30 Georgia 27232 A 26 25
31 Georgia 27233 T 26 25
32 Georgia 27234 A 26 25
33 Georgia 27235 G 26 25
34 Georgia 27236 C 26 25
35 Georgia 27237 A 26 25
36 Georgia 27238 G 26 25
37 Georgia 27239 A 26 25
38 Georgia 27240 G 26 25
39 Georgia 27241 A 26 25
40 Georgia 27242 T 26 25
41 Georgia 27243 A 26 25
42 Georgia 27244 T 26 25
43 Georgia 27245 T 26 25
44 Georgia 27246 A 26 25
45 Georgia 27247 C 26 25
46 Georgia 27248 T 26 25
47 Georgia 27249 A 26 25
48 Georgia 27250 A 26 25
49 Georgia 27251 T 26 25
50 Georgia 27252 T 26 25
51 Georgia 27253 A 26 25
52 Georgia 27254 T 26 25
53 Georgia 27255 T 26 25
54 Georgia 27256 A 26 25
55 Georgia 27257 T 26 25
56 Georgia 27258 G 26 25
57 Georgia 27259 A 26 25
58 Georgia 27260 G 26 25
59 Georgia 27261 G 26 25
60 Georgia 27262 A 26 25
61 Georgia 27263 C 26 25
62 Georgia 27264 T 26 25
63 Georgia 27265 T 26 25
64 Georgia 27266 T 26 25
65 Georgia 27267 T 26 25
66 Georgia 27268 A 26 25
67 Georgia 27269 A 26 25
68 Georgia 27270 A 26 25
69 Georgia 27271 G 26 25
70 Georgia 27272 T 26 25
71 Georgia 27273 T 26 25
72 Georgia 27274 T 26 25
73 Georgia 27275 C 26 25
74 Georgia 27276 C 26 25
75 Georgia 27277 A 26 25
76 Georgia 27278 T 26 25
77 Georgia 27279 T 26 25
78 Georgia 27280 T 26 25
79 Georgia 27281 G 26 25
80 Georgia 27282 G 26 25
81 Georgia 27283 A 26 25
82 Georgia 27284 A 26 25
83 Georgia 27285 T 26 25
84 Georgia 27286 C 26 25
85 Georgia 27287 T 26 25
86 Georgia 27288 T 26 25
87 Georgia 27289 G 26 25
88 Georgia 27290 A 26 25
89 Georgia 27291 T 26 25
90 Georgia 27292 T 26 25
91 Georgia 27293 A 26 25
92 Georgia 27294 C 26 25
93 Georgia 27295 A 26 25
94 Georgia 27296 T 26 25
95 Georgia 27297 C 26 25
96 Georgia 27298 A 26 25
97 Georgia 27299 T 26 25
98 Georgia 27300 A 26 25
99 Georgia 27301 A 26 25
100 Georgia 27302 A 26 25
101 Georgia 27303 C 26 25
102 Georgia 27304 C 26 25
103 Georgia 27305 T 26 25
104 Georgia 27306 C 26 25
105 Georgia 27307 A 26 25
106 Georgia 27308 T 26 25
107 Georgia 27309 A 26 25
108 Georgia 27310 A 26 25
109 Georgia 27311 T 26 25
110 Georgia 27312 T 26 25
111 Georgia 27313 A 26 25
112 Georgia 27314 A 26 25
113 Georgia 27315 A 26 25
114 Georgia 27316 A 26 25
115 Georgia 27317 A 26 25
116 Georgia 27318 T 26 25
117 Georgia 27319 T 26 25
118 Georgia 27320 T 26 25
119 Georgia 27321 A 26 25
120 Georgia 27322 T 26 25
121 Georgia 27323 C 26 25
122 Georgia 27324 T 26 25
123 Georgia 27325 A 26 25
124 Georgia 27326 A 26 25
125 Georgia 27327 G 26 25
126 Georgia 27328 T 26 25
127 Georgia 27329 C 26 25
128 Georgia 27330 A 26 25
129 Georgia 27331 C 26 25
130 Georgia 27332 T 26 25
131 Georgia 27333 A 26 25
132 Georgia 27334 A 26 25
133 Georgia 27335 C 26 25
134 Georgia 27336 T 26 25
135 Georgia 27337 G 26 25
136 Georgia 27338 A 26 25
137 Georgia 27339 G 26 25
138 Georgia 27340 A 26 25
139 Georgia 27341 A 26 25
140 Georgia 27342 T 26 25
141 Georgia 27343 A 26 25
142 Georgia 27344 A 26 25
143 Georgia 27345 A 26 25
144 Georgia 27346 T 26 25
145 Georgia 27347 A 26 25
146 Georgia 27348 T 26 25
147 Georgia 27349 T 26 25
148 Georgia 27350 C 26 25
149 Georgia 27351 T 26 25
150 Georgia 27352 C 26 25
151 Georgia 27353 A 26 25
152 Georgia 27354 A 26 25
153 Georgia 27355 T 26 25
154 Georgia 27356 T 26 25
155 Georgia 27357 A 26 25
156 Georgia 27358 G 26 25
157 Georgia 27359 A 26 25
158 Georgia 27360 T 26 25
159 Georgia 27361 G 26 25
160 Georgia 27362 A 26 25
161 Georgia 27363 A 26 25
162 Georgia 27364 G 26 25
163 Georgia 27365 A 26 25
164 Georgia 27366 G 26 25
165 Georgia 27367 C 26 25
166 Georgia 27368 A 26 25
167 Georgia 27369 A 26 25
168 Georgia 27370 C 26 25
169 Georgia 27371 C 26 25
170 Georgia 27372 A 26 25
171 Georgia 27373 A 26 25
172 Georgia 27374 T 26 25
173 Georgia 27375 G 26 25
174 Georgia 27376 G 26 25
175 Georgia 27377 A 26 25
176 Georgia 27378 G 26 25
177 Georgia 27379 A 26 25
178 Georgia 27380 T 26 25
179 Georgia 27381 T 26 25
180 Georgia 27382 G 26 25
181 Georgia 27383 A 26 25
182 Georgia 27384 T 26 25
183 Georgia 27385 T 26 25
184 Georgia 27386 A 26 25
185 Georgia 27387 A 26 25