National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 27202 A 6 6
1 El_Salvador 27203 T 6 6
2 El_Salvador 27204 G 6 6
3 El_Salvador 27205 T 6 6
4 El_Salvador 27206 T 6 6
5 El_Salvador 27207 T 6 6
6 El_Salvador 27208 C 6 6
7 El_Salvador 27209 A 6 6
8 El_Salvador 27210 T 6 6
9 El_Salvador 27211 C 6 6
10 El_Salvador 27212 T 6 6
11 El_Salvador 27213 C 6 6
12 El_Salvador 27214 G 6 6
13 El_Salvador 27215 T 6 6
14 El_Salvador 27216 T 6 6
15 El_Salvador 27217 G 6 6
16 El_Salvador 27218 A 6 6
17 El_Salvador 27219 C 6 6
18 El_Salvador 27220 T 6 6
19 El_Salvador 27221 T 6 6
20 El_Salvador 27222 T 6 6
21 El_Salvador 27223 C 6 6
22 El_Salvador 27224 A 6 6
23 El_Salvador 27225 G 6 6
24 El_Salvador 27226 G 6 6
25 El_Salvador 27227 T 6 6
26 El_Salvador 27228 T 6 6
27 El_Salvador 27229 A 6 6
28 El_Salvador 27230 C 6 6
29 El_Salvador 27231 T 6 6
30 El_Salvador 27232 A 6 6
31 El_Salvador 27233 T 6 6
32 El_Salvador 27234 A 6 6
33 El_Salvador 27235 G 6 6
34 El_Salvador 27236 C 6 6
35 El_Salvador 27237 A 6 6
36 El_Salvador 27238 G 6 6
37 El_Salvador 27239 A 6 6
38 El_Salvador 27240 G 6 6
39 El_Salvador 27241 A 6 6
40 El_Salvador 27242 T 6 6
41 El_Salvador 27243 A 6 6
42 El_Salvador 27244 T 6 6
43 El_Salvador 27245 T 6 6
44 El_Salvador 27246 A 6 6
45 El_Salvador 27247 C 6 6
46 El_Salvador 27248 T 6 6
47 El_Salvador 27249 A 6 6
48 El_Salvador 27250 A 6 6
49 El_Salvador 27251 T 6 6
50 El_Salvador 27252 T 6 6
51 El_Salvador 27253 A 6 6
52 El_Salvador 27254 T 6 6
53 El_Salvador 27255 T 6 6
54 El_Salvador 27256 A 6 6
55 El_Salvador 27257 T 6 6
56 El_Salvador 27258 G 6 6
57 El_Salvador 27259 A 6 6
58 El_Salvador 27260 G 6 6
59 El_Salvador 27261 G 6 6
60 El_Salvador 27262 A 6 6
61 El_Salvador 27263 C 6 6
62 El_Salvador 27264 T 6 6
63 El_Salvador 27265 T 6 6
64 El_Salvador 27266 T 6 6
65 El_Salvador 27267 T 6 6
66 El_Salvador 27268 A 6 6
67 El_Salvador 27269 A 6 6
68 El_Salvador 27270 A 6 6
69 El_Salvador 27271 G 6 6
70 El_Salvador 27272 T 6 6
71 El_Salvador 27273 T 6 6
72 El_Salvador 27274 T 6 6
73 El_Salvador 27275 C 6 6
74 El_Salvador 27276 C 6 6
75 El_Salvador 27277 A 6 6
76 El_Salvador 27278 T 6 6
77 El_Salvador 27279 T 6 6
78 El_Salvador 27280 T 6 6
79 El_Salvador 27281 G 6 6
80 El_Salvador 27282 G 6 6
81 El_Salvador 27283 A 6 6
82 El_Salvador 27284 A 6 6
83 El_Salvador 27285 T 6 6
84 El_Salvador 27286 C 6 6
85 El_Salvador 27287 T 6 6
86 El_Salvador 27288 T 6 6
87 El_Salvador 27289 G 6 6
88 El_Salvador 27290 A 6 6
89 El_Salvador 27291 T 6 6
90 El_Salvador 27292 T 6 6
91 El_Salvador 27293 A 6 6
92 El_Salvador 27294 C 6 6
93 El_Salvador 27295 A 6 6
94 El_Salvador 27296 T 6 6
95 El_Salvador 27297 C 6 6
96 El_Salvador 27298 A 6 6
97 El_Salvador 27299 T 6 6
98 El_Salvador 27300 A 6 6
99 El_Salvador 27301 A 6 6
100 El_Salvador 27302 A 6 6
101 El_Salvador 27303 C 6 6
102 El_Salvador 27304 C 6 6
103 El_Salvador 27305 T 6 6
104 El_Salvador 27306 C 6 6
105 El_Salvador 27307 A 6 6
106 El_Salvador 27308 T 6 6
107 El_Salvador 27309 A 6 6
108 El_Salvador 27310 A 6 6
109 El_Salvador 27311 T 6 6
110 El_Salvador 27312 T 6 6
111 El_Salvador 27313 A 6 6
112 El_Salvador 27314 A 6 6
113 El_Salvador 27315 A 6 6
114 El_Salvador 27316 A 6 6
115 El_Salvador 27317 A 6 6
116 El_Salvador 27318 T 6 6
117 El_Salvador 27319 T 6 6
118 El_Salvador 27320 T 6 6
119 El_Salvador 27321 A 6 6
120 El_Salvador 27322 T 6 6
121 El_Salvador 27323 C 6 6
122 El_Salvador 27324 T 6 6
123 El_Salvador 27325 A 6 6
124 El_Salvador 27326 A 6 6
125 El_Salvador 27327 G 6 6
126 El_Salvador 27328 T 6 6
127 El_Salvador 27329 C 6 6
128 El_Salvador 27330 A 6 6
129 El_Salvador 27331 C 6 6
130 El_Salvador 27332 T 6 6
131 El_Salvador 27333 A 6 6
132 El_Salvador 27334 A 6 6
133 El_Salvador 27335 C 6 6
134 El_Salvador 27336 T 6 6
135 El_Salvador 27337 G 6 6
136 El_Salvador 27338 A 6 6
137 El_Salvador 27339 G 6 6
138 El_Salvador 27340 A 6 6
139 El_Salvador 27341 A 6 6
140 El_Salvador 27342 T 6 6
141 El_Salvador 27343 A 6 6
142 El_Salvador 27344 A 6 6
143 El_Salvador 27345 A 6 6
144 El_Salvador 27346 T 6 6
145 El_Salvador 27347 A 6 6
146 El_Salvador 27348 T 6 6
147 El_Salvador 27349 T 6 6
148 El_Salvador 27350 C 6 6
149 El_Salvador 27351 T 6 6
150 El_Salvador 27352 C 6 6
151 El_Salvador 27353 A 6 6
152 El_Salvador 27354 A 6 6
153 El_Salvador 27355 T 6 6
154 El_Salvador 27356 T 6 6
155 El_Salvador 27357 A 6 6
156 El_Salvador 27358 G 6 6
157 El_Salvador 27359 A 6 6
158 El_Salvador 27360 T 6 6
159 El_Salvador 27361 G 6 6
160 El_Salvador 27362 A 6 6
161 El_Salvador 27363 A 6 6
162 El_Salvador 27364 G 6 6
163 El_Salvador 27365 A 6 6
164 El_Salvador 27366 G 6 6
165 El_Salvador 27367 C 6 6
166 El_Salvador 27368 A 6 6
167 El_Salvador 27369 A 6 6
168 El_Salvador 27370 C 6 6
169 El_Salvador 27371 C 6 6
170 El_Salvador 27372 A 6 6
171 El_Salvador 27373 A 6 6
172 El_Salvador 27374 T 6 6
173 El_Salvador 27375 G 6 6
174 El_Salvador 27376 G 6 6
175 El_Salvador 27377 A 6 6
176 El_Salvador 27378 G 6 6
177 El_Salvador 27379 A 6 6
178 El_Salvador 27380 T 6 6
179 El_Salvador 27381 T 6 6
180 El_Salvador 27382 G 6 6
181 El_Salvador 27383 A 6 6
182 El_Salvador 27384 T 6 6
183 El_Salvador 27385 T 6 6
184 El_Salvador 27386 A 6 6
185 El_Salvador 27387 A 6 6