National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1               1                
E     16                                    
F     9                                    
H     3                                    
I     30           1                 1      
K     12                   1                
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                         1          
S     12                                    
T     9                                    
V     9                                    
W     3               1                    
Y     6                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Egypt 27202 A 365 365
1 Egypt 27203 T 365 365
2 Egypt 27204 G 365 365
3 Egypt 27205 T 365 365
4 Egypt 27206 T 365 365
5 Egypt 27207 T 365 365
6 Egypt 27208 C 365 365
7 Egypt 27209 A 365 365
8 Egypt 27210 T 365 365
9 Egypt 27211 C 365 365
10 Egypt 27212 T 365 365
11 Egypt 27213 C 365 365
12 Egypt 27214 G 365 365
13 Egypt 27215 T 365 365
14 Egypt 27216 T 365 365
15 Egypt 27217 G 365 365
16 Egypt 27218 A 365 365
17 Egypt 27219 C 365 365
18 Egypt 27220 T 366 366
19 Egypt 27221 T 366 366
20 Egypt 27222 T 366 366
21 Egypt 27223 C 366 366
22 Egypt 27224 A 366 366
23 Egypt 27225 G 366 366
24 Egypt 27226 G 366 366
25 Egypt 27227 T 366 366
26 Egypt 27228 T 366 366
27 Egypt 27229 A 366 366
28 Egypt 27230 C 366 366
29 Egypt 27231 T 366 366
30 Egypt 27232 A 366 366
31 Egypt 27233 T 366 366
32 Egypt 27234 A 366 366
33 Egypt 27235 G 366 366
34 Egypt 27236 C 366 366
35 Egypt 27237 A 366 366
36 Egypt 27238 G 366 366
37 Egypt 27239 A 366 366
38 Egypt 27240 G 366 366
39 Egypt 27241 A 366 366
40 Egypt 27242 T 366 366
41 Egypt 27243 A 366 366
42 Egypt 27244 T 366 366
43 Egypt 27245 T 366 366
44 Egypt 27246 A 366 366
45 Egypt 27247 C 366 366
46 Egypt 27248 T 366 366
47 Egypt 27249 A 366 366
48 Egypt 27250 A 366 366
49 Egypt 27251 T 366 366
50 Egypt 27252 T 366 366
51 Egypt 27253 A 366 366
52 Egypt 27254 T 366 366
53 Egypt 27255 T 366 366
54 Egypt 27256 A 366 366
55 Egypt 27257 T 366 366
56 Egypt 27258 G 366 366
57 Egypt 27259 A 366 366
58 Egypt 27260 G 366 366
59 Egypt 27261 G A 366 365 Arg20Arg
60 Egypt 27262 A 366 366
61 Egypt 27263 C 366 366
62 Egypt 27264 T 366 366
63 Egypt 27265 T 366 366
64 Egypt 27266 T 366 366
65 Egypt 27267 T 366 366
66 Egypt 27268 A 366 366
67 Egypt 27269 A 366 366
68 Egypt 27270 A 366 366
69 Egypt 27271 G 366 366
70 Egypt 27272 T 366 366
71 Egypt 27273 T 366 366
72 Egypt 27274 T 366 366
73 Egypt 27275 C 366 366
74 Egypt 27276 C 366 366
75 Egypt 27277 A 366 366
76 Egypt 27278 T 366 366
77 Egypt 27279 T 366 366
78 Egypt 27280 T 366 366
79 Egypt 27281 G T 366 360 Trp27Leu
80 Egypt 27282 G 366 366
81 Egypt 27283 A 366 366
82 Egypt 27284 A 366 366
83 Egypt 27285 T 366 366
84 Egypt 27286 C 366 366
85 Egypt 27287 T 366 366
86 Egypt 27288 T 366 366
87 Egypt 27289 G 366 366
88 Egypt 27290 A 366 366
89 Egypt 27291 T 366 366
90 Egypt 27292 T 366 366
91 Egypt 27293 A 366 366
92 Egypt 27294 C T 366 358 Tyr31Tyr
93 Egypt 27295 A 366 366
94 Egypt 27296 T 366 366
95 Egypt 27297 C T 366 365 Ile32Ile
96 Egypt 27298 A 366 366
97 Egypt 27299 T C 366 365 Ile33Thr
98 Egypt 27300 A 366 366
99 Egypt 27301 A 366 366
100 Egypt 27302 A 366 366
101 Egypt 27303 C 366 366
102 Egypt 27304 C 366 366
103 Egypt 27305 T 366 365
104 Egypt 27306 C 366 365
105 Egypt 27307 A 366 365
106 Egypt 27308 T 366 365
107 Egypt 27309 A 366 365
108 Egypt 27310 A 366 365
109 Egypt 27311 T 366 365
110 Egypt 27312 T 366 365
111 Egypt 27313 A 366 365
112 Egypt 27314 A 366 365
113 Egypt 27315 A 366 365
114 Egypt 27316 A 366 365
115 Egypt 27317 A 366 365
116 Egypt 27318 T 366 365
117 Egypt 27319 T 366 365
118 Egypt 27320 T 366 365
119 Egypt 27321 A 366 365
120 Egypt 27322 T 366 365
121 Egypt 27323 C 366 365
122 Egypt 27324 T 366 365
123 Egypt 27325 A 366 365
124 Egypt 27326 A 366 365
125 Egypt 27327 G 366 365
126 Egypt 27328 T 366 365
127 Egypt 27329 C 366 366
128 Egypt 27330 A 366 366
129 Egypt 27331 C 366 366
130 Egypt 27332 T 366 366
131 Egypt 27333 A 366 366
132 Egypt 27334 A 366 366
133 Egypt 27335 C 366 366
134 Egypt 27336 T 366 366
135 Egypt 27337 G 366 366
136 Egypt 27338 A 366 366
137 Egypt 27339 G 366 366
138 Egypt 27340 A 366 366
139 Egypt 27341 A 366 366
140 Egypt 27342 T 366 366
141 Egypt 27343 A 366 366
142 Egypt 27344 A 366 366
143 Egypt 27345 A T 366 364 Lys48Asn
144 Egypt 27346 T 366 366
145 Egypt 27347 A 366 366
146 Egypt 27348 T 366 366
147 Egypt 27349 T 366 366
148 Egypt 27350 C 366 366
149 Egypt 27351 T 366 366
150 Egypt 27352 C 366 366
151 Egypt 27353 A 366 366
152 Egypt 27354 A 366 366
153 Egypt 27355 T 366 366
154 Egypt 27356 T 366 366
155 Egypt 27357 A 366 366
156 Egypt 27358 G A 366 365 Asp53Asn
157 Egypt 27359 A 366 366
158 Egypt 27360 T 366 366
159 Egypt 27361 G 366 365
160 Egypt 27362 A 366 366
161 Egypt 27363 A 366 366
162 Egypt 27364 G 366 366
163 Egypt 27365 A 366 366
164 Egypt 27366 G 366 366
165 Egypt 27367 C 366 366
166 Egypt 27368 A 366 366
167 Egypt 27369 A 366 366
168 Egypt 27370 C 366 366
169 Egypt 27371 C 366 366
170 Egypt 27372 A 366 366
171 Egypt 27373 A 366 366
172 Egypt 27374 T 366 366
173 Egypt 27375 G 366 366
174 Egypt 27376 G 366 366
175 Egypt 27377 A 366 366
176 Egypt 27378 G 366 366
177 Egypt 27379 A 366 366
178 Egypt 27380 T 366 366
179 Egypt 27381 T 366 366
180 Egypt 27382 G 366 366
181 Egypt 27383 A 366 366
182 Egypt 27384 T C 366 364 Asp61Asp
183 Egypt 27385 T 366 366
184 Egypt 27386 A 366 366
185 Egypt 27387 A 366 366