National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F G H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
D     12                                      
E     16   1     1                            
F     9                 1                    
G                                            
H     3                                      
I     30                                      
K     12                                      
L     24                 3     1              
M     9                                 1    
N     12                                      
P     3                                      
Q     9                                      
R     3                                      
S     12                                      
T     9                                      
V     9                                      
W     3                                      
Y     6                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Czech_Republic 27202 A 602 602
1 Czech_Republic 27203 T 602 602
2 Czech_Republic 27204 G 602 602
3 Czech_Republic 27205 T 602 602
4 Czech_Republic 27206 T 602 602
5 Czech_Republic 27207 T 602 602
6 Czech_Republic 27208 C 602 602
7 Czech_Republic 27209 A 602 602
8 Czech_Republic 27210 T 602 602
9 Czech_Republic 27211 C 602 602
10 Czech_Republic 27212 T C 602 601 Leu4Pro
11 Czech_Republic 27213 C 602 602
12 Czech_Republic 27214 G 602 602
13 Czech_Republic 27215 T 602 602
14 Czech_Republic 27216 T 602 602
15 Czech_Republic 27217 G 602 602
16 Czech_Republic 27218 A 602 602
17 Czech_Republic 27219 C 602 602
18 Czech_Republic 27220 T C 602 601 Phe7Leu
19 Czech_Republic 27221 T 602 602
20 Czech_Republic 27222 T 602 602
21 Czech_Republic 27223 C 602 602
22 Czech_Republic 27224 A 602 602
23 Czech_Republic 27225 G 602 602
24 Czech_Republic 27226 G 602 602
25 Czech_Republic 27227 T 602 602
26 Czech_Republic 27228 T 602 602
27 Czech_Republic 27229 A 602 602
28 Czech_Republic 27230 C 602 602
29 Czech_Republic 27231 T 602 602
30 Czech_Republic 27232 A 602 602
31 Czech_Republic 27233 T 602 602
32 Czech_Republic 27234 A 602 602
33 Czech_Republic 27235 G 602 602
34 Czech_Republic 27236 C 602 602
35 Czech_Republic 27237 A 602 602
36 Czech_Republic 27238 G 602 602
37 Czech_Republic 27239 A 602 602
38 Czech_Republic 27240 G 602 602
39 Czech_Republic 27241 A 602 602
40 Czech_Republic 27242 T 602 602
41 Czech_Republic 27243 A 602 602
42 Czech_Republic 27244 T C 602 601 Leu15Leu
43 Czech_Republic 27245 T 602 602
44 Czech_Republic 27246 A 602 602
45 Czech_Republic 27247 C T 602 600 Leu16Leu
46 Czech_Republic 27248 T 602 602
47 Czech_Republic 27249 A 602 602
48 Czech_Republic 27250 A 602 602
49 Czech_Republic 27251 T 602 602
50 Czech_Republic 27252 T 602 602
51 Czech_Republic 27253 A 602 602
52 Czech_Republic 27254 T 602 602
53 Czech_Republic 27255 T 602 602
54 Czech_Republic 27256 A G 602 601 Met19Val
55 Czech_Republic 27257 T 602 602
56 Czech_Republic 27258 G 602 602
57 Czech_Republic 27259 A 602 602
58 Czech_Republic 27260 G 602 602
59 Czech_Republic 27261 G 602 602
60 Czech_Republic 27262 A 602 602
61 Czech_Republic 27263 C 602 602
62 Czech_Republic 27264 T 602 602
63 Czech_Republic 27265 T 602 602
64 Czech_Republic 27266 T 602 602
65 Czech_Republic 27267 T 602 602
66 Czech_Republic 27268 A 602 602
67 Czech_Republic 27269 A 602 602
68 Czech_Republic 27270 A 602 602
69 Czech_Republic 27271 G 602 602
70 Czech_Republic 27272 T 602 602
71 Czech_Republic 27273 T 602 602
72 Czech_Republic 27274 T 602 602
73 Czech_Republic 27275 C 602 602
74 Czech_Republic 27276 C 602 602
75 Czech_Republic 27277 A 602 602
76 Czech_Republic 27278 T 602 602
77 Czech_Republic 27279 T 602 602
78 Czech_Republic 27280 T 602 602
79 Czech_Republic 27281 G 602 602
80 Czech_Republic 27282 G 602 602
81 Czech_Republic 27283 A 602 602
82 Czech_Republic 27284 A 602 602
83 Czech_Republic 27285 T 602 602
84 Czech_Republic 27286 C 602 602
85 Czech_Republic 27287 T 602 602
86 Czech_Republic 27288 T 602 602
87 Czech_Republic 27289 G 602 602
88 Czech_Republic 27290 A 602 602
89 Czech_Republic 27291 T 602 602
90 Czech_Republic 27292 T 602 602
91 Czech_Republic 27293 A 602 602
92 Czech_Republic 27294 C 602 602
93 Czech_Republic 27295 A 602 602
94 Czech_Republic 27296 T 602 602
95 Czech_Republic 27297 C 602 602
96 Czech_Republic 27298 A 602 602
97 Czech_Republic 27299 T 602 602
98 Czech_Republic 27300 A 602 602
99 Czech_Republic 27301 A 602 602
100 Czech_Republic 27302 A 602 602
101 Czech_Republic 27303 C 602 602
102 Czech_Republic 27304 C 602 602
103 Czech_Republic 27305 T 602 602
104 Czech_Republic 27306 C 602 602
105 Czech_Republic 27307 A 602 602
106 Czech_Republic 27308 T 602 602
107 Czech_Republic 27309 A 602 602
108 Czech_Republic 27310 A 602 602
109 Czech_Republic 27311 T 602 602
110 Czech_Republic 27312 T 602 602
111 Czech_Republic 27313 A 602 602
112 Czech_Republic 27314 A 602 602
113 Czech_Republic 27315 A 602 602
114 Czech_Republic 27316 A 602 602
115 Czech_Republic 27317 A 602 602
116 Czech_Republic 27318 T 602 602
117 Czech_Republic 27319 T C 602 601 Leu40Leu
118 Czech_Republic 27320 T 602 602
119 Czech_Republic 27321 A 602 602
120 Czech_Republic 27322 T 602 602
121 Czech_Republic 27323 C 602 602
122 Czech_Republic 27324 T 602 602
123 Czech_Republic 27325 A 602 602
124 Czech_Republic 27326 A 602 602
125 Czech_Republic 27327 G 602 602
126 Czech_Republic 27328 T 602 602
127 Czech_Republic 27329 C 602 602
128 Czech_Republic 27330 A 602 602
129 Czech_Republic 27331 C 602 602
130 Czech_Republic 27332 T 602 602
131 Czech_Republic 27333 A 602 602
132 Czech_Republic 27334 A 602 602
133 Czech_Republic 27335 C 602 602
134 Czech_Republic 27336 T 602 602
135 Czech_Republic 27337 G 602 602
136 Czech_Republic 27338 A 602 602
137 Czech_Republic 27339 G 602 602
138 Czech_Republic 27340 A 602 602
139 Czech_Republic 27341 A 602 602
140 Czech_Republic 27342 T 602 602
141 Czech_Republic 27343 A 602 602
142 Czech_Republic 27344 A 602 602
143 Czech_Republic 27345 A 602 602
144 Czech_Republic 27346 T 602 602
145 Czech_Republic 27347 A 602 602
146 Czech_Republic 27348 T 602 602
147 Czech_Republic 27349 T 602 602
148 Czech_Republic 27350 C 602 602
149 Czech_Republic 27351 T 602 602
150 Czech_Republic 27352 C 602 602
151 Czech_Republic 27353 A 602 602
152 Czech_Republic 27354 A 602 602
153 Czech_Republic 27355 T 602 602
154 Czech_Republic 27356 T 602 602
155 Czech_Republic 27357 A 602 602
156 Czech_Republic 27358 G 602 602
157 Czech_Republic 27359 A 602 602
158 Czech_Republic 27360 T 602 602
159 Czech_Republic 27361 G 602 602
160 Czech_Republic 27362 A 602 602
161 Czech_Republic 27363 A 602 602
162 Czech_Republic 27364 G 602 602
163 Czech_Republic 27365 A G 602 601 Glu55Gly
164 Czech_Republic 27366 G T 602 601 Glu55Asp
165 Czech_Republic 27367 C 602 602
166 Czech_Republic 27368 A 602 602
167 Czech_Republic 27369 A 602 602
168 Czech_Republic 27370 C 602 602
169 Czech_Republic 27371 C 602 602
170 Czech_Republic 27372 A 602 602
171 Czech_Republic 27373 A 602 602
172 Czech_Republic 27374 T 602 602
173 Czech_Republic 27375 G 602 602
174 Czech_Republic 27376 G 602 602
175 Czech_Republic 27377 A 602 602
176 Czech_Republic 27378 G 602 602
177 Czech_Republic 27379 A 602 602
178 Czech_Republic 27380 T 602 602
179 Czech_Republic 27381 T 602 602
180 Czech_Republic 27382 G 601 601
181 Czech_Republic 27383 A 601 601
182 Czech_Republic 27384 T 601 601
183 Czech_Republic 27385 T 601 601
184 Czech_Republic 27386 A 601 601
185 Czech_Republic 27387 A 601 601