National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cyprus 27202 A 8 8
1 Cyprus 27203 T 8 8
2 Cyprus 27204 G 8 8
3 Cyprus 27205 T 8 8
4 Cyprus 27206 T 8 8
5 Cyprus 27207 T 8 8
6 Cyprus 27208 C 8 8
7 Cyprus 27209 A 8 8
8 Cyprus 27210 T 8 8
9 Cyprus 27211 C 8 8
10 Cyprus 27212 T 8 8
11 Cyprus 27213 C 8 8
12 Cyprus 27214 G 8 8
13 Cyprus 27215 T 8 8
14 Cyprus 27216 T 8 8
15 Cyprus 27217 G 8 8
16 Cyprus 27218 A 8 8
17 Cyprus 27219 C 8 8
18 Cyprus 27220 T 8 8
19 Cyprus 27221 T 8 8
20 Cyprus 27222 T 8 8
21 Cyprus 27223 C 8 8
22 Cyprus 27224 A 8 8
23 Cyprus 27225 G 8 8
24 Cyprus 27226 G 8 8
25 Cyprus 27227 T 8 8
26 Cyprus 27228 T 8 8
27 Cyprus 27229 A 8 8
28 Cyprus 27230 C 8 8
29 Cyprus 27231 T 8 8
30 Cyprus 27232 A 8 8
31 Cyprus 27233 T 8 8
32 Cyprus 27234 A 8 8
33 Cyprus 27235 G 8 8
34 Cyprus 27236 C 8 8
35 Cyprus 27237 A 8 8
36 Cyprus 27238 G 8 8
37 Cyprus 27239 A 8 8
38 Cyprus 27240 G 8 8
39 Cyprus 27241 A 8 8
40 Cyprus 27242 T 8 8
41 Cyprus 27243 A 8 8
42 Cyprus 27244 T 8 8
43 Cyprus 27245 T 8 8
44 Cyprus 27246 A 8 8
45 Cyprus 27247 C 8 8
46 Cyprus 27248 T 8 8
47 Cyprus 27249 A 8 8
48 Cyprus 27250 A 8 8
49 Cyprus 27251 T 8 8
50 Cyprus 27252 T 8 8
51 Cyprus 27253 A 8 8
52 Cyprus 27254 T 8 8
53 Cyprus 27255 T 8 8
54 Cyprus 27256 A 8 8
55 Cyprus 27257 T 8 8
56 Cyprus 27258 G 8 8
57 Cyprus 27259 A 8 8
58 Cyprus 27260 G 8 8
59 Cyprus 27261 G 8 8
60 Cyprus 27262 A 8 8
61 Cyprus 27263 C 8 8
62 Cyprus 27264 T 8 8
63 Cyprus 27265 T 8 8
64 Cyprus 27266 T 8 8
65 Cyprus 27267 T 8 8
66 Cyprus 27268 A 8 8
67 Cyprus 27269 A 8 8
68 Cyprus 27270 A 8 8
69 Cyprus 27271 G 8 8
70 Cyprus 27272 T 8 8
71 Cyprus 27273 T 8 8
72 Cyprus 27274 T 8 8
73 Cyprus 27275 C 8 8
74 Cyprus 27276 C 8 8
75 Cyprus 27277 A 8 8
76 Cyprus 27278 T 8 8
77 Cyprus 27279 T 8 8
78 Cyprus 27280 T 8 8
79 Cyprus 27281 G 8 8
80 Cyprus 27282 G 8 8
81 Cyprus 27283 A 8 8
82 Cyprus 27284 A 8 8
83 Cyprus 27285 T 8 8
84 Cyprus 27286 C 8 8
85 Cyprus 27287 T 8 8
86 Cyprus 27288 T 8 8
87 Cyprus 27289 G 8 8
88 Cyprus 27290 A 8 8
89 Cyprus 27291 T 8 8
90 Cyprus 27292 T 8 8
91 Cyprus 27293 A 8 8
92 Cyprus 27294 C 8 8
93 Cyprus 27295 A 8 8
94 Cyprus 27296 T 8 8
95 Cyprus 27297 C 8 8
96 Cyprus 27298 A 8 8
97 Cyprus 27299 T 8 8
98 Cyprus 27300 A 8 8
99 Cyprus 27301 A 8 8
100 Cyprus 27302 A 8 8
101 Cyprus 27303 C 8 8
102 Cyprus 27304 C 8 8
103 Cyprus 27305 T 8 8
104 Cyprus 27306 C 8 8
105 Cyprus 27307 A 8 8
106 Cyprus 27308 T 8 8
107 Cyprus 27309 A 8 8
108 Cyprus 27310 A 8 8
109 Cyprus 27311 T 8 8
110 Cyprus 27312 T 8 8
111 Cyprus 27313 A 8 8
112 Cyprus 27314 A 8 8
113 Cyprus 27315 A 8 8
114 Cyprus 27316 A 8 8
115 Cyprus 27317 A 8 8
116 Cyprus 27318 T 8 8
117 Cyprus 27319 T 8 8
118 Cyprus 27320 T 8 8
119 Cyprus 27321 A 8 8
120 Cyprus 27322 T 8 8
121 Cyprus 27323 C 8 8
122 Cyprus 27324 T 8 8
123 Cyprus 27325 A 8 8
124 Cyprus 27326 A 8 8
125 Cyprus 27327 G 8 8
126 Cyprus 27328 T 8 8
127 Cyprus 27329 C 8 8
128 Cyprus 27330 A 8 8
129 Cyprus 27331 C 8 8
130 Cyprus 27332 T 8 8
131 Cyprus 27333 A 8 8
132 Cyprus 27334 A 8 8
133 Cyprus 27335 C 8 8
134 Cyprus 27336 T 8 8
135 Cyprus 27337 G 8 8
136 Cyprus 27338 A 8 8
137 Cyprus 27339 G 8 8
138 Cyprus 27340 A 8 8
139 Cyprus 27341 A 8 8
140 Cyprus 27342 T 8 8
141 Cyprus 27343 A 8 8
142 Cyprus 27344 A 8 8
143 Cyprus 27345 A 8 8
144 Cyprus 27346 T 8 8
145 Cyprus 27347 A 8 8
146 Cyprus 27348 T 8 8
147 Cyprus 27349 T 8 8
148 Cyprus 27350 C 8 8
149 Cyprus 27351 T 8 8
150 Cyprus 27352 C 8 8
151 Cyprus 27353 A 8 8
152 Cyprus 27354 A 8 8
153 Cyprus 27355 T 8 8
154 Cyprus 27356 T 8 8
155 Cyprus 27357 A 8 8
156 Cyprus 27358 G 8 8
157 Cyprus 27359 A 8 8
158 Cyprus 27360 T 8 8
159 Cyprus 27361 G 8 8
160 Cyprus 27362 A 8 8
161 Cyprus 27363 A 8 8
162 Cyprus 27364 G 8 8
163 Cyprus 27365 A 8 8
164 Cyprus 27366 G 8 8
165 Cyprus 27367 C 8 8
166 Cyprus 27368 A 8 8
167 Cyprus 27369 A 8 8
168 Cyprus 27370 C 8 8
169 Cyprus 27371 C 8 8
170 Cyprus 27372 A 8 8
171 Cyprus 27373 A 8 8
172 Cyprus 27374 T 8 8
173 Cyprus 27375 G 8 8
174 Cyprus 27376 G 8 8
175 Cyprus 27377 A 8 8
176 Cyprus 27378 G 8 8
177 Cyprus 27379 A 8 8
178 Cyprus 27380 T 8 8
179 Cyprus 27381 T 8 8
180 Cyprus 27382 G 8 8
181 Cyprus 27383 A 8 8
182 Cyprus 27384 T 8 8
183 Cyprus 27385 T 8 8
184 Cyprus 27386 A 8 8
185 Cyprus 27387 A 8 8