National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24               1                    
M     9                                    
N     12                                    
P     3                                    
Q 1   9                                    
R     3                                    
S     12                                    
T     9           1                        
V     9                               1    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Croatia 27202 A 50 50
1 Croatia 27203 T 50 50
2 Croatia 27204 G 50 50
3 Croatia 27205 T 50 50
4 Croatia 27206 T 50 50
5 Croatia 27207 T 50 50
6 Croatia 27208 C 50 50
7 Croatia 27209 A 50 50
8 Croatia 27210 T 50 50
9 Croatia 27211 C 50 50
10 Croatia 27212 T 50 50
11 Croatia 27213 C 50 50
12 Croatia 27214 G 50 50
13 Croatia 27215 T 50 50
14 Croatia 27216 T A 50 49 Val5Val
15 Croatia 27217 G 50 50
16 Croatia 27218 A 50 50
17 Croatia 27219 C 50 50
18 Croatia 27220 T 50 50
19 Croatia 27221 T 50 50
20 Croatia 27222 T 50 50
21 Croatia 27223 C 50 50
22 Croatia 27224 A 50 50
23 Croatia 27225 G 50 50
24 Croatia 27226 G 50 50
25 Croatia 27227 T 50 50
26 Croatia 27228 T 50 50
27 Croatia 27229 A 50 50
28 Croatia 27230 C 50 50
29 Croatia 27231 T 50 50
30 Croatia 27232 A 50 50
31 Croatia 27233 T 50 50
32 Croatia 27234 A 50 50
33 Croatia 27235 G 50 50
34 Croatia 27236 C 50 50
35 Croatia 27237 A 50 50
36 Croatia 27238 G 50 50
37 Croatia 27239 A 50 50
38 Croatia 27240 G 50 50
39 Croatia 27241 A 50 50
40 Croatia 27242 T 50 50
41 Croatia 27243 A 50 50
42 Croatia 27244 T 50 50
43 Croatia 27245 T 50 50
44 Croatia 27246 A 50 50
45 Croatia 27247 C 50 50
46 Croatia 27248 T 50 50
47 Croatia 27249 A 50 50
48 Croatia 27250 A 50 50
49 Croatia 27251 T 50 50
50 Croatia 27252 T 50 50
51 Croatia 27253 A 50 50
52 Croatia 27254 T 50 50
53 Croatia 27255 T 50 50
54 Croatia 27256 A 50 50
55 Croatia 27257 T 50 50
56 Croatia 27258 G 50 50
57 Croatia 27259 A 50 50
58 Croatia 27260 G 50 50
59 Croatia 27261 G 50 50
60 Croatia 27262 A 50 50
61 Croatia 27263 C T 50 49 Thr21Ile
62 Croatia 27264 T 50 50
63 Croatia 27265 T 50 50
64 Croatia 27266 T 50 50
65 Croatia 27267 T 50 50
66 Croatia 27268 A 50 50
67 Croatia 27269 A 50 50
68 Croatia 27270 A 50 50
69 Croatia 27271 G 50 50
70 Croatia 27272 T 50 50
71 Croatia 27273 T 50 50
72 Croatia 27274 T 50 50
73 Croatia 27275 C 50 50
74 Croatia 27276 C 50 50
75 Croatia 27277 A 50 50
76 Croatia 27278 T 50 50
77 Croatia 27279 T 50 50
78 Croatia 27280 T 50 50
79 Croatia 27281 G 50 50
80 Croatia 27282 G 50 50
81 Croatia 27283 A 50 50
82 Croatia 27284 A 50 50
83 Croatia 27285 T 50 50
84 Croatia 27286 C 50 50
85 Croatia 27287 T 50 50
86 Croatia 27288 T 50 50
87 Croatia 27289 G 50 50
88 Croatia 27290 A 50 50
89 Croatia 27291 T 50 50
90 Croatia 27292 T 50 50
91 Croatia 27293 A 50 50
92 Croatia 27294 C 50 50
93 Croatia 27295 A 50 50
94 Croatia 27296 T 50 50
95 Croatia 27297 C 50 50
96 Croatia 27298 A 50 50
97 Croatia 27299 T 50 50
98 Croatia 27300 A 50 50
99 Croatia 27301 A 50 50
100 Croatia 27302 A 50 50
101 Croatia 27303 C 50 50
102 Croatia 27304 C 50 50
103 Croatia 27305 T 50 50
104 Croatia 27306 C 50 50
105 Croatia 27307 A 50 50
106 Croatia 27308 T 50 50
107 Croatia 27309 A 50 50
108 Croatia 27310 A 50 50
109 Croatia 27311 T 50 50
110 Croatia 27312 T 50 50
111 Croatia 27313 A 50 50
112 Croatia 27314 A 50 50
113 Croatia 27315 A 50 50
114 Croatia 27316 A 50 50
115 Croatia 27317 A 50 50
116 Croatia 27318 T 50 50
117 Croatia 27319 T C 50 49 Leu40Leu
118 Croatia 27320 T 50 50
119 Croatia 27321 A 50 50
120 Croatia 27322 T 50 50
121 Croatia 27323 C 50 50
122 Croatia 27324 T 50 50
123 Croatia 27325 A 50 50
124 Croatia 27326 A 50 50
125 Croatia 27327 G 50 50
126 Croatia 27328 T 50 50
127 Croatia 27329 C 50 50
128 Croatia 27330 A 50 50
129 Croatia 27331 C 50 50
130 Croatia 27332 T 50 50
131 Croatia 27333 A 50 50
132 Croatia 27334 A 50 50
133 Croatia 27335 C 50 50
134 Croatia 27336 T 50 50
135 Croatia 27337 G 50 50
136 Croatia 27338 A 50 50
137 Croatia 27339 G 50 50
138 Croatia 27340 A 50 50
139 Croatia 27341 A 50 50
140 Croatia 27342 T 50 50
141 Croatia 27343 A 50 50
142 Croatia 27344 A 50 50
143 Croatia 27345 A 50 50
144 Croatia 27346 T 50 50
145 Croatia 27347 A 50 50
146 Croatia 27348 T 50 50
147 Croatia 27349 T 50 50
148 Croatia 27350 C 50 50
149 Croatia 27351 T 50 50
150 Croatia 27352 C 50 50
151 Croatia 27353 A 50 50
152 Croatia 27354 A 50 50
153 Croatia 27355 T 50 50
154 Croatia 27356 T 50 50
155 Croatia 27357 A 50 50
156 Croatia 27358 G 50 50
157 Croatia 27359 A 50 50
158 Croatia 27360 T 50 50
159 Croatia 27361 G 50 50
160 Croatia 27362 A 50 50
161 Croatia 27363 A 50 50
162 Croatia 27364 G 50 50
163 Croatia 27365 A 50 50
164 Croatia 27366 G 50 50
165 Croatia 27367 C T 50 45 Gln56*
166 Croatia 27368 A 50 50
167 Croatia 27369 A 50 50
168 Croatia 27370 C 50 50
169 Croatia 27371 C 50 50
170 Croatia 27372 A 50 50
171 Croatia 27373 A 50 50
172 Croatia 27374 T 50 50
173 Croatia 27375 G 50 50
174 Croatia 27376 G 50 50
175 Croatia 27377 A 50 50
176 Croatia 27378 G 50 50
177 Croatia 27379 A 50 50
178 Croatia 27380 T 50 50
179 Croatia 27381 T 50 50
180 Croatia 27382 G 50 50
181 Croatia 27383 A 50 50
182 Croatia 27384 T 50 50
183 Croatia 27385 T 50 50
184 Croatia 27386 A 50 50
185 Croatia 27387 A 50 50