National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16   1                                
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 CotedIvoire 27202 A 65 65
1 CotedIvoire 27203 T 65 65
2 CotedIvoire 27204 G 65 65
3 CotedIvoire 27205 T 65 65
4 CotedIvoire 27206 T 65 65
5 CotedIvoire 27207 T 65 65
6 CotedIvoire 27208 C 65 65
7 CotedIvoire 27209 A 65 65
8 CotedIvoire 27210 T 65 65
9 CotedIvoire 27211 C 65 65
10 CotedIvoire 27212 T 65 65
11 CotedIvoire 27213 C 65 65
12 CotedIvoire 27214 G 65 65
13 CotedIvoire 27215 T 65 65
14 CotedIvoire 27216 T 65 65
15 CotedIvoire 27217 G 65 65
16 CotedIvoire 27218 A 65 65
17 CotedIvoire 27219 C 65 65
18 CotedIvoire 27220 T 65 65
19 CotedIvoire 27221 T 65 65
20 CotedIvoire 27222 T 65 65
21 CotedIvoire 27223 C 65 65
22 CotedIvoire 27224 A 65 65
23 CotedIvoire 27225 G 65 65
24 CotedIvoire 27226 G 65 65
25 CotedIvoire 27227 T 65 65
26 CotedIvoire 27228 T 65 65
27 CotedIvoire 27229 A 65 65
28 CotedIvoire 27230 C 65 65
29 CotedIvoire 27231 T 65 65
30 CotedIvoire 27232 A 65 65
31 CotedIvoire 27233 T 65 65
32 CotedIvoire 27234 A 65 65
33 CotedIvoire 27235 G 65 65
34 CotedIvoire 27236 C 65 65
35 CotedIvoire 27237 A 65 65
36 CotedIvoire 27238 G 65 65
37 CotedIvoire 27239 A 65 65
38 CotedIvoire 27240 G 65 65
39 CotedIvoire 27241 A 65 65
40 CotedIvoire 27242 T 65 65
41 CotedIvoire 27243 A 65 65
42 CotedIvoire 27244 T 65 65
43 CotedIvoire 27245 T 65 65
44 CotedIvoire 27246 A 65 65
45 CotedIvoire 27247 C 65 65
46 CotedIvoire 27248 T 65 65
47 CotedIvoire 27249 A 65 65
48 CotedIvoire 27250 A 65 65
49 CotedIvoire 27251 T 65 65
50 CotedIvoire 27252 T 65 65
51 CotedIvoire 27253 A 65 65
52 CotedIvoire 27254 T 65 65
53 CotedIvoire 27255 T 65 65
54 CotedIvoire 27256 A 65 65
55 CotedIvoire 27257 T 65 65
56 CotedIvoire 27258 G 65 65
57 CotedIvoire 27259 A 65 65
58 CotedIvoire 27260 G 65 65
59 CotedIvoire 27261 G 65 65
60 CotedIvoire 27262 A 65 65
61 CotedIvoire 27263 C 65 65
62 CotedIvoire 27264 T 65 65
63 CotedIvoire 27265 T 65 65
64 CotedIvoire 27266 T 65 65
65 CotedIvoire 27267 T 65 65
66 CotedIvoire 27268 A 65 65
67 CotedIvoire 27269 A 65 65
68 CotedIvoire 27270 A 65 65
69 CotedIvoire 27271 G 65 65
70 CotedIvoire 27272 T 65 65
71 CotedIvoire 27273 T 65 65
72 CotedIvoire 27274 T 65 65
73 CotedIvoire 27275 C 65 65
74 CotedIvoire 27276 C 65 65
75 CotedIvoire 27277 A 65 65
76 CotedIvoire 27278 T 65 65
77 CotedIvoire 27279 T 65 65
78 CotedIvoire 27280 T 65 65
79 CotedIvoire 27281 G 65 65
80 CotedIvoire 27282 G 65 65
81 CotedIvoire 27283 A 65 65
82 CotedIvoire 27284 A 65 65
83 CotedIvoire 27285 T 65 65
84 CotedIvoire 27286 C 65 65
85 CotedIvoire 27287 T 65 65
86 CotedIvoire 27288 T 65 65
87 CotedIvoire 27289 G 65 65
88 CotedIvoire 27290 A 65 65
89 CotedIvoire 27291 T 65 65
90 CotedIvoire 27292 T 65 65
91 CotedIvoire 27293 A 65 65
92 CotedIvoire 27294 C T 65 63 Tyr31Tyr
93 CotedIvoire 27295 A 65 65
94 CotedIvoire 27296 T 65 65
95 CotedIvoire 27297 C 65 65
96 CotedIvoire 27298 A 65 65
97 CotedIvoire 27299 T 65 65
98 CotedIvoire 27300 A 65 65
99 CotedIvoire 27301 A 65 65
100 CotedIvoire 27302 A 65 65
101 CotedIvoire 27303 C 65 65
102 CotedIvoire 27304 C 65 65
103 CotedIvoire 27305 T 65 65
104 CotedIvoire 27306 C 65 65
105 CotedIvoire 27307 A 65 65
106 CotedIvoire 27308 T 65 65
107 CotedIvoire 27309 A 65 65
108 CotedIvoire 27310 A 65 65
109 CotedIvoire 27311 T 65 65
110 CotedIvoire 27312 T 65 65
111 CotedIvoire 27313 A 65 65
112 CotedIvoire 27314 A 65 65
113 CotedIvoire 27315 A 65 65
114 CotedIvoire 27316 A 65 65
115 CotedIvoire 27317 A 65 65
116 CotedIvoire 27318 T 65 65
117 CotedIvoire 27319 T 65 65
118 CotedIvoire 27320 T 65 65
119 CotedIvoire 27321 A 65 65
120 CotedIvoire 27322 T 65 65
121 CotedIvoire 27323 C 65 65
122 CotedIvoire 27324 T 65 65
123 CotedIvoire 27325 A 65 65
124 CotedIvoire 27326 A 65 65
125 CotedIvoire 27327 G 65 65
126 CotedIvoire 27328 T 65 65
127 CotedIvoire 27329 C 65 65
128 CotedIvoire 27330 A 65 65
129 CotedIvoire 27331 C 65 65
130 CotedIvoire 27332 T 65 65
131 CotedIvoire 27333 A 65 65
132 CotedIvoire 27334 A 65 65
133 CotedIvoire 27335 C 65 65
134 CotedIvoire 27336 T 65 65
135 CotedIvoire 27337 G 65 65
136 CotedIvoire 27338 A 65 65
137 CotedIvoire 27339 G 65 65
138 CotedIvoire 27340 A 65 65
139 CotedIvoire 27341 A 65 65
140 CotedIvoire 27342 T 65 65
141 CotedIvoire 27343 A 65 65
142 CotedIvoire 27344 A 65 65
143 CotedIvoire 27345 A 65 65
144 CotedIvoire 27346 T 65 65
145 CotedIvoire 27347 A 65 65
146 CotedIvoire 27348 T 65 65
147 CotedIvoire 27349 T 65 65
148 CotedIvoire 27350 C 65 65
149 CotedIvoire 27351 T 65 65
150 CotedIvoire 27352 C 65 65
151 CotedIvoire 27353 A 65 65
152 CotedIvoire 27354 A 65 65
153 CotedIvoire 27355 T 65 65
154 CotedIvoire 27356 T 65 65
155 CotedIvoire 27357 A 65 65
156 CotedIvoire 27358 G 65 65
157 CotedIvoire 27359 A 65 65
158 CotedIvoire 27360 T 65 65
159 CotedIvoire 27361 G 65 65
160 CotedIvoire 27362 A 65 65
161 CotedIvoire 27363 A 65 65
162 CotedIvoire 27364 G 65 65
163 CotedIvoire 27365 A 65 65
164 CotedIvoire 27366 G 65 65
165 CotedIvoire 27367 C 65 65
166 CotedIvoire 27368 A 65 65
167 CotedIvoire 27369 A 65 65
168 CotedIvoire 27370 C 65 65
169 CotedIvoire 27371 C 65 65
170 CotedIvoire 27372 A 65 65
171 CotedIvoire 27373 A 65 65
172 CotedIvoire 27374 T 65 65
173 CotedIvoire 27375 G 65 65
174 CotedIvoire 27376 G 65 65
175 CotedIvoire 27377 A 65 65
176 CotedIvoire 27378 G T 65 64 Glu59Asp
177 CotedIvoire 27379 A 65 65
178 CotedIvoire 27380 T 65 65
179 CotedIvoire 27381 T 65 65
180 CotedIvoire 27382 G 65 65
181 CotedIvoire 27383 A 65 65
182 CotedIvoire 27384 T 65 65
183 CotedIvoire 27385 T 65 65
184 CotedIvoire 27386 A 65 65
185 CotedIvoire 27387 A 65 65